Detailed information NTG0188431

Bioinformatically predicted

Overview

• Name: ssb
• Type: Machinery gene
• Locus tag: A4W81_RS09675
• Genome accession: NZ_CP016465
• Coordinates: 1884160..1884672 (-)
• Length: 170 a.a.
• NCBI ID: WP_011373726.1
• Uniprot ID: A0A094Y4Q3
• Organism: Latilactobacillus sakei strain TMW 1.3
• Function: ssDNA binding (predicted from homology) DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Prophage	1875160..1892621	1884160..1884672	within	0

Gene organization within MGE regions

Location: 1875160..1892621

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
A4W81_RS09635 (A4W81_09495)	-	1875160..1875927 (-)	768	WP_016264318.1	AAA family ATPase	-
A4W81_RS09640 (A4W81_09500)	noc	1875939..1876838 (-)	900	WP_099713022.1	nucleoid occlusion protein	-
A4W81_RS09645 (A4W81_09505)	rsmG	1876838..1877578 (-)	741	WP_011373731.1	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	-
A4W81_RS09650 (A4W81_09510)	-	1877947..1879287 (+)	1341	WP_076631987.1	nucleobase:cation symporter-2 family protein	-
A4W81_RS09655 (A4W81_09515)	dnaB	1879638..1881032 (-)	1395	WP_172425613.1	replicative DNA helicase	-
A4W81_RS09660 (A4W81_09520)	rplI	1881166..1881618 (-)	453	WP_011373728.1	50S ribosomal protein L9	-
A4W81_RS09665 (A4W81_09525)	-	1881639..1883672 (-)	2034	WP_011373727.1	DHH family phosphoesterase	-
A4W81_RS09670 (A4W81_09530)	rpsR	1883890..1884129 (-)	240	WP_004265822.1	30S ribosomal protein S18	-
A4W81_RS09675 (A4W81_09535)	ssb	1884160..1884672 (-)	513	WP_011373726.1	single-stranded DNA-binding protein	Machinery gene
A4W81_RS09680 (A4W81_09540)	rpsF	1884711..1885007 (-)	297	WP_011373725.1	30S ribosomal protein S6	-
A4W81_RS09685 (A4W81_09545)	gyrA	1885244..1887817 (-)	2574	WP_056946786.1	DNA gyrase subunit A	-
A4W81_RS09690 (A4W81_09550)	gyrB	1887865..1889826 (-)	1962	WP_094365902.1	DNA topoisomerase (ATP-hydrolyzing) subunit B	-
A4W81_RS09695 (A4W81_09555)	recF	1889878..1891005 (-)	1128	WP_076631985.1	DNA replication/repair protein RecF	-
A4W81_RS09700 (A4W81_09560)	yaaA	1891012..1891239 (-)	228	WP_016264312.1	S4 domain-containing protein YaaA	-
A4W81_RS09705 (A4W81_09565)	dnaN	1891482..1892621 (-)	1140	WP_112220877.1	DNA polymerase III subunit beta	-

Sequence

Protein

• Length: 170 a.a.
• Molecular weight: 18610.19 Da
• Isoelectric Point: 4.6856

>NTDB_id=188431 A4W81_RS09675 WP_011373726.1 1884160..1884672(-) (ssb) [Latilactobacillus sakei strain TMW 1.3]
MINRVVLVGRLTRDVDLRYTSSGAAVGTFSMAVNRQFTNANGDREADFINCVIWRKSAENFANFTKKGSLVGVDGRLQTR
NYENQQGQRVYVTEVVVDNFSLLESRTTTEQRQGDGASQNFNSNQSNGSQQSGFTSPQQTGNAPAANNTQADPFANNGQA
IDISDDDLPF

Nucleotide

• Length: 513 bp

>NTDB_id=188431 A4W81_RS09675 WP_011373726.1 1884160..1884672(-) (ssb) [Latilactobacillus sakei strain TMW 1.3]
ATGATTAATCGAGTTGTACTCGTTGGTCGGCTAACACGCGATGTTGACTTACGTTACACTTCTAGTGGTGCTGCAGTTGG
GACTTTCTCAATGGCAGTTAACCGTCAATTCACGAACGCTAACGGCGATCGTGAAGCAGACTTTATTAATTGTGTCATTT
GGCGTAAATCAGCGGAAAATTTCGCTAACTTTACTAAAAAGGGCTCATTAGTAGGGGTTGATGGCCGTCTACAAACTAGA
AATTATGAAAATCAACAAGGTCAACGTGTCTACGTGACTGAAGTGGTTGTCGATAATTTCTCATTGTTAGAATCACGGAC
AACAACAGAGCAACGGCAAGGTGATGGCGCAAGTCAGAACTTTAATAGTAATCAAAGCAATGGTAGCCAACAATCTGGAT
TTACCAGCCCTCAACAAACGGGTAACGCACCAGCCGCAAATAACACTCAAGCCGATCCATTTGCAAATAATGGTCAAGCG
ATTGATATTTCGGATGATGACTTACCTTTCTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (2-102)

3D structure

• AlphaFold DB: A0A094Y4Q3

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssb	Latilactobacillus sakei subsp. sakei 23K	100	100	1
ssbA	Bacillus subtilis subsp. subtilis str. 168	56	100	0.576
ssb	Glaesserella parasuis strain SC1401	33.69	100	0.371
ssbB	Bacillus subtilis subsp. subtilis str. 168	59.434	62.353	0.371