Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BSY15_RS06860 Genome accession   NZ_CP016447
Coordinates   1531493..1532056 (-) Length   187 a.a.
NCBI ID   WP_069104178.1    Uniprot ID   A0A1B3PHP4
Organism   Acidovorax sp. RAC01     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1526493..1537056
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSY15_RS06840 (BSY15_1385) - 1526507..1527442 (-) 936 WP_069104174.1 U32 family peptidase -
  BSY15_RS06845 (BSY15_1386) - 1527740..1528774 (-) 1035 WP_197506412.1 peptidase U32 family protein -
  BSY15_RS06850 (BSY15_1387) - 1529022..1530209 (+) 1188 WP_069104176.1 MFS transporter -
  BSY15_RS06855 (BSY15_1388) mnmA 1530284..1531399 (+) 1116 WP_069104177.1 tRNA 2-thiouridine(34) synthase MnmA -
  BSY15_RS06860 (BSY15_1389) ssb 1531493..1532056 (-) 564 WP_069104178.1 single-stranded DNA-binding protein Machinery gene
  BSY15_RS06865 (BSY15_1390) - 1532186..1533367 (-) 1182 WP_069104179.1 MFS transporter -
  BSY15_RS06870 (BSY15_1391) - 1533665..1535812 (-) 2148 WP_069104180.1 choice-of-anchor U domain-containing protein -
  BSY15_RS06875 (BSY15_1392) - 1535851..1536393 (-) 543 WP_069104181.1 tail fiber protein -
  BSY15_RS06880 (BSY15_1393) - 1536413..1536919 (-) 507 WP_069104182.1 tail fiber protein -

Sequence

Protein


Download         Length: 187 a.a.        Molecular weight: 19835.96 Da        Isoelectric Point: 5.9505

>NTDB_id=188317 BSY15_RS06860 WP_069104178.1 1531493..1532056(-) (ssb) [Acidovorax sp. RAC01]
MASVNKVIIVGNLGRDPEMRTFPSGDQVANVTIATTDKWKDKQSGEMKEATEWHRVVFNGRLAEIAGQYLRKGSQVYVEG
SLRTRKWTDQSGVEKYSTEIRADQMQMLGSRQGMGGGQQGGGGGGGYDDGGYGGGGDQGGGYDQAPRRAAAPAARPPAPM
QRPAPAPVAQAPRAASGFDDMDDDIPF

Nucleotide


Download         Length: 564 bp        

>NTDB_id=188317 BSY15_RS06860 WP_069104178.1 1531493..1532056(-) (ssb) [Acidovorax sp. RAC01]
ATGGCATCCGTCAACAAAGTCATCATCGTCGGCAATCTCGGCCGCGACCCCGAAATGCGCACCTTCCCCAGCGGCGACCA
GGTGGCCAACGTGACCATTGCCACCACCGACAAGTGGAAGGACAAGCAGTCGGGCGAGATGAAGGAAGCCACCGAATGGC
ACCGCGTGGTGTTCAACGGCCGCCTGGCCGAGATCGCCGGCCAGTACCTGCGCAAGGGTTCGCAGGTGTACGTGGAAGGC
TCGCTGCGCACCCGCAAGTGGACCGACCAGAGCGGCGTGGAAAAGTACAGCACCGAGATCCGTGCTGACCAGATGCAGAT
GCTGGGCAGCCGCCAGGGCATGGGCGGCGGCCAGCAAGGCGGCGGCGGTGGTGGCGGCTACGACGATGGCGGCTACGGTG
GCGGTGGCGACCAGGGCGGTGGCTACGACCAGGCCCCGCGCCGCGCTGCAGCCCCGGCTGCGCGCCCGCCCGCACCCATG
CAGCGCCCCGCCCCGGCCCCCGTGGCACAGGCGCCCCGCGCGGCCTCGGGCTTTGACGACATGGACGACGACATTCCGTT
CTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B3PHP4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

52.632

100

0.535
  ssb Vibrio cholerae strain A1552

50.259

100

0.519
  ssb Neisseria gonorrhoeae MS11

41.622

98.93

0.412
  ssb Neisseria meningitidis MC58

41.081

98.93

0.406

Multiple sequence alignment