Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   Ptc2401_RS09805 Genome accession   NZ_CP016432
Coordinates   2087800..2088282 (+) Length   160 a.a.
NCBI ID   WP_068867910.1    Uniprot ID   A0A1B1Q4M8
Organism   Prosthecochloris sp. CIB 2401 strain CIB2401     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2082800..2093282
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Ptc2401_RS09780 (Ptc2401_02035) - 2082973..2084454 (-) 1482 WP_068867906.1 hypothetical protein -
  Ptc2401_RS09785 (Ptc2401_02036) - 2084674..2084919 (-) 246 WP_068867907.1 bacteriochlorophyll c-binding family protein -
  Ptc2401_RS09790 (Ptc2401_02037) - 2085016..2085435 (-) 420 WP_068868302.1 chlorosome protein C -
  Ptc2401_RS09795 (Ptc2401_02038) - 2085549..2086766 (-) 1218 WP_068867908.1 TRC40/GET3/ArsA family transport-energizing ATPase -
  Ptc2401_RS09800 (Ptc2401_02039) - 2086960..2087763 (+) 804 WP_068867909.1 dihydroorotate dehydrogenase electron transfer subunit -
  Ptc2401_RS09805 (Ptc2401_02040) ssb 2087800..2088282 (+) 483 WP_068867910.1 single-stranded DNA-binding protein Machinery gene
  Ptc2401_RS09810 (Ptc2401_02041) holA 2088282..2089325 (+) 1044 WP_068867911.1 DNA polymerase III subunit delta -
  Ptc2401_RS09815 (Ptc2401_02042) - 2089315..2090316 (-) 1002 WP_068867912.1 NAD-dependent epimerase/dehydratase family protein -
  Ptc2401_RS09820 (Ptc2401_02043) - 2090475..2091677 (+) 1203 WP_068867913.1 pyridoxal phosphate-dependent aminotransferase family protein -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17884.92 Da        Isoelectric Point: 5.2451

>NTDB_id=188213 Ptc2401_RS09805 WP_068867910.1 2087800..2088282(+) (ssb) [Prosthecochloris sp. CIB 2401 strain CIB2401]
MARGLNKVMLIGNLGSDPEMRALPSGQTVTNFTLATNESFKDSSGVLQERTEWHRIVVWGKLAEICNQYLRKGRQVYLEG
KIQTRSWDDSKTGEKRYATEIVCNDMQMLGSPMQQQGSNYGNQGYGNQTSYAPQQPQEQGGYQPSPGMGQGEPEKDDLPF

Nucleotide


Download         Length: 483 bp        

>NTDB_id=188213 Ptc2401_RS09805 WP_068867910.1 2087800..2088282(+) (ssb) [Prosthecochloris sp. CIB 2401 strain CIB2401]
ATGGCACGAGGACTCAACAAGGTAATGCTCATCGGAAACCTAGGCTCCGACCCGGAAATGAGAGCTCTTCCATCCGGCCA
GACCGTCACCAACTTCACACTCGCCACGAACGAAAGCTTCAAAGACAGCTCCGGAGTACTTCAGGAACGCACGGAATGGC
ACAGGATCGTTGTCTGGGGAAAACTTGCCGAAATCTGCAACCAGTACCTCCGAAAAGGTCGCCAGGTCTACCTTGAAGGC
AAGATCCAGACCCGGAGCTGGGACGACAGCAAGACTGGCGAAAAGCGTTACGCAACCGAAATAGTCTGCAACGACATGCA
GATGCTTGGCTCGCCAATGCAGCAGCAGGGCAGCAACTATGGCAACCAGGGATACGGCAACCAAACGAGCTATGCTCCCC
AGCAGCCTCAGGAACAGGGTGGATACCAGCCTTCACCCGGAATGGGCCAGGGTGAGCCTGAAAAAGACGACCTGCCATTC
TGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B1Q4M8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

45.856

100

0.519
  ssb Glaesserella parasuis strain SC1401

43.478

100

0.5
  ssb Neisseria gonorrhoeae MS11

45.087

100

0.488
  ssb Neisseria meningitidis MC58

45.087

100

0.488

Multiple sequence alignment