Detailed information NTG0187693

Bioinformatically predicted

Overview

• Name: chiS
• Type: Regulator
• Locus tag: vm_RS12090
• Genome accession: NZ_CP016383
• Coordinates: 2588010..2591543 (+)
• Length: 1177 a.a.
• NCBI ID: WP_196770024.1
• Uniprot ID: -
• Organism: Vibrio mimicus strain SCCF01
• Function: chitin sensor (predicted from homology) Competence regulation

Genomic Context

Location: 2583010..2596543

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
vm_RS12060 (VM_12065)	erpA	2583604..2583945 (-)	342	WP_000005742.1	iron-sulfur cluster insertion protein ErpA	-
vm_RS21665 (VM_12070)	-	2583963..2584232 (+)	270	WP_000426327.1	hypothetical protein	-
vm_RS12070 (VM_12075)	hemL	2584229..2585527 (+)	1299	WP_000167253.1	glutamate-1-semialdehyde 2,1-aminomutase	-
vm_RS21505 (VM_12080)	-	2585573..2585728 (-)	156	WP_155761215.1	hypothetical protein	-
vm_RS12080 (VM_12085)	-	2585765..2586850 (+)	1086	WP_070382252.1	AI-2E family transporter	-
vm_RS12085 (VM_12090)	rsmC	2586924..2587946 (+)	1023	WP_070382253.1	16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	-
vm_RS12090 (VM_12095)	chiS	2588010..2591543 (+)	3534	WP_196770024.1	two-component system sensor histidine kinase ChiS	Regulator
vm_RS12095 (VM_12100)	-	2592224..2593894 (+)	1671	WP_000880696.1	ABC transporter substrate-binding protein	-
vm_RS12100 (VM_12105)	-	2594064..2595050 (+)	987	WP_000540341.1	ABC transporter permease	-
vm_RS12105 (VM_12110)	-	2595053..2596078 (+)	1026	WP_000646277.1	ABC transporter permease	-

Sequence

Protein

• Length: 1177 a.a.
• Molecular weight: 133241.33 Da
• Isoelectric Point: 6.5534

>NTDB_id=187693 vm_RS12090 WP_196770024.1 2588010..2591543(+) (chiS) [Vibrio mimicus strain SCCF01]
MRLCPRFRLDLLVKVKKLVNFVTLGFSCQSPTHAWRSPQSFTKSNALIMFRFYRKQKFKRLQNTLMAAFLALSIIPLTIT
ALFFLHSHSKDLEEQSTSYLVSVRDTKQQQVIDYMMAKESEVMGFVRSELAYASGGRFYGLVNAFQRLDVSIEAAREHAQ
QRYIPGSGDQIKTSVLPQSSSYVGSERYRLLHKRYHWAYLELLKRSDFDDILLVDIEGNVVYSIYKYDNFGTNLLTGKYK
DSSLGSTFKRLEQTVNEQRKTNEDFTPVVISDFVQEDGKQYAWLGAPIIQQGYLHSYAMFRLPSNAITKLIADGSSNPSM
QTILVGQDHRSRTLTSAEVAVEKSREVVDLALSGKRSVGTYTNTDDEEIIAAYAPINLKSIHWALVVELPEKEAFARVRQ
LEKLFVFAMLTAIVLVVIASHYLSNFITSPLLKLTWAAERVSAGDLDEAMINTERKDEIGRLAVSFERMQRSIREKISLI
KSQNKELENNLLIIRKQNDELQLANKLKDEFLATTSHELRTPLHGMIGIAEALVSGANGPLTAAHKYQLDIIISSGQRLA
TLVDDLLDYHKMRYGALDIQKGAVDLSSATRLVLELSNHLLGKKTLRIINQVSEQPVWVSADPQRLEQVLYNLIGNAIKY
TSEGKIVISATYIDDKVRVQVVDTGQGIPAEQLEQIFEPLIQAGRDASRYRQGAGLGLSISRQLIELMNGTLYVSSQPMV
GTTFSFTLPLATQEEIDQARLTELPHFQAPEILDTELPEQSTLPENEHGPLLLVADDEPVNLRVLDSFLRLEGYRVHTAQ
DGHEVLEAIQREKPELLLLDIMMPGMSGYQVCEKLRQTYDHAELPIIMLTALNQSDDRVRGFEAGANDYLSKPFNKQELA
ARIVAHLTASKAELRRIENAQLQKELKHRAMVEASLLETQGRLLEQLESAPEAILCVKEGNKVRFANEAAARLFRRTPEQ
LKRSNAEELIAPKYLNIEQEHYCGNIDVYVDDVRQHLSADVLRLPEGSGLQAMYIFNVGGSINAARIFNLETAVEALSSY
AFEGDKDKLQKLKELGGEFTRIADKASGEYQSKQDLMRAVLVEAMTSALNYWENVSGQSKFTFAEQSGLWRVYLDRSTLQ
TRTLDKYLRIETLPKTPRWRTVLNSLDYILEYCKEPGPDRTHIEMQRDKLQKLLTSE

Nucleotide

• Length: 3534 bp

>NTDB_id=187693 vm_RS12090 WP_196770024.1 2588010..2591543(+) (chiS) [Vibrio mimicus strain SCCF01]
TTGCGTCTATGCCCACGCTTTAGATTGGACTTACTTGTCAAAGTAAAAAAACTCGTTAATTTCGTTACTTTAGGTTTTTC
TTGTCAATCACCCACTCATGCTTGGCGATCGCCACAGAGTTTCACCAAAAGTAATGCCTTAATTATGTTTAGGTTCTATC
GAAAACAAAAATTCAAGCGCCTGCAAAATACGCTAATGGCGGCATTTCTGGCACTCAGTATTATTCCATTAACCATCACG
GCGCTGTTTTTCCTCCATTCACACAGTAAAGATTTGGAAGAGCAAAGCACCTCTTACCTTGTTTCAGTACGCGATACCAA
ACAGCAGCAAGTGATTGATTATATGATGGCTAAAGAGTCGGAAGTGATGGGCTTTGTCCGTTCCGAACTCGCTTATGCCA
GTGGTGGTCGCTTTTATGGCTTAGTGAACGCTTTCCAGCGCTTAGATGTCAGCATTGAAGCGGCACGCGAGCATGCCCAG
CAGCGCTATATACCGGGTTCAGGTGATCAAATAAAAACCTCAGTACTGCCACAATCAAGTAGCTATGTGGGCAGTGAACG
CTATCGGCTCCTGCACAAACGTTATCATTGGGCTTATTTAGAACTGCTGAAACGCTCGGATTTTGACGACATATTACTGG
TAGATATTGAAGGCAACGTTGTTTACTCCATCTATAAATATGACAACTTCGGCACCAACTTATTAACGGGAAAATATAAA
GATTCCAGTCTGGGGAGTACCTTTAAACGCCTCGAGCAAACCGTTAATGAACAGCGCAAGACTAACGAAGATTTCACACC
TGTGGTTATCTCTGACTTTGTGCAAGAAGATGGAAAACAATATGCTTGGCTCGGTGCGCCCATCATTCAACAAGGGTATT
TGCACAGTTACGCTATGTTCCGCCTGCCAAGTAATGCGATCACTAAGCTGATCGCGGATGGCAGTAGCAATCCATCGATG
CAAACCATTTTGGTTGGCCAAGATCATCGTTCAAGAACCTTAACTTCCGCTGAAGTGGCGGTTGAAAAAAGCAGAGAAGT
GGTCGATTTAGCCTTGTCTGGCAAACGTTCTGTCGGCACTTACACCAATACCGATGATGAAGAGATCATTGCTGCGTACG
CCCCTATTAATCTGAAAAGTATTCATTGGGCGTTAGTAGTAGAATTACCAGAAAAAGAAGCCTTTGCTCGCGTACGTCAG
TTAGAAAAGCTCTTCGTTTTCGCCATGCTTACGGCGATTGTCTTAGTGGTCATTGCTTCCCATTACCTATCCAACTTCAT
TACTTCCCCACTGTTGAAACTAACTTGGGCAGCAGAACGAGTCTCGGCGGGCGATCTTGATGAAGCAATGATCAATACCG
AACGTAAAGATGAAATTGGCCGATTGGCGGTCAGTTTTGAACGCATGCAGCGCTCTATACGCGAAAAAATATCGCTGATC
AAATCGCAAAACAAAGAGCTAGAAAACAATCTCCTGATCATCCGTAAACAAAACGATGAATTGCAACTCGCGAACAAACT
CAAAGATGAATTCCTCGCGACAACATCGCACGAGTTACGCACTCCCCTGCATGGCATGATCGGGATTGCTGAAGCGTTAG
TCTCTGGTGCTAATGGCCCACTGACCGCCGCTCATAAGTATCAGCTCGACATCATCATCAGTAGTGGACAACGCTTAGCC
ACCTTGGTTGATGACCTGCTGGACTACCACAAAATGCGCTATGGTGCGTTGGATATCCAAAAAGGTGCCGTCGATTTATC
GAGTGCAACCCGTTTAGTGCTTGAGCTTTCAAATCATTTGCTCGGCAAAAAAACGCTGCGCATCATTAATCAAGTCTCAG
AGCAACCTGTCTGGGTATCGGCCGATCCACAACGCTTAGAACAAGTTCTGTATAACCTGATCGGTAACGCGATCAAGTAC
ACCTCCGAAGGTAAGATTGTTATCTCAGCAACCTATATTGACGATAAAGTCAGGGTACAAGTCGTGGATACAGGACAAGG
TATTCCTGCTGAGCAGCTTGAACAGATCTTTGAACCTTTAATCCAAGCAGGGCGCGATGCCAGCCGCTATCGTCAAGGTG
CGGGACTCGGGCTCTCCATTAGTCGTCAGTTAATTGAGCTAATGAACGGCACTCTTTATGTGAGTAGCCAGCCTATGGTT
GGTACGACATTCAGCTTTACTCTGCCGTTGGCCACACAAGAGGAAATTGACCAAGCTCGTTTGACTGAGTTACCTCATTT
CCAAGCACCGGAAATTTTAGATACCGAGCTGCCAGAGCAAAGTACACTGCCTGAAAATGAGCATGGCCCACTTCTGCTTG
TCGCCGATGATGAGCCAGTAAACCTCAGAGTATTGGACAGTTTTTTACGTCTCGAAGGTTATCGCGTTCATACTGCTCAA
GATGGCCATGAAGTGCTTGAAGCCATTCAGCGTGAGAAACCGGAGCTCTTGTTACTGGACATCATGATGCCGGGCATGAG
TGGCTATCAAGTCTGTGAAAAACTAAGACAGACTTACGATCATGCAGAACTCCCTATCATCATGTTGACCGCTCTTAACC
AATCAGATGACCGAGTACGCGGATTTGAAGCTGGGGCGAATGACTATTTGTCCAAACCTTTTAATAAGCAGGAATTGGCT
GCGCGTATCGTTGCCCACCTCACTGCCAGCAAAGCTGAACTAAGGCGCATTGAAAATGCTCAGCTCCAAAAAGAGCTGAA
GCATCGTGCCATGGTAGAAGCCAGCTTACTCGAAACGCAAGGACGCTTGTTAGAGCAATTAGAATCGGCACCAGAAGCGA
TTCTATGCGTCAAAGAAGGCAACAAAGTACGCTTTGCTAATGAAGCAGCCGCCCGTTTATTTAGACGCACACCAGAACAG
CTCAAACGCTCGAATGCTGAAGAGTTGATTGCACCTAAATACCTGAATATTGAGCAAGAACATTACTGTGGCAACATCGA
TGTTTACGTGGATGATGTACGACAGCATCTGTCGGCGGATGTACTGCGTTTACCGGAAGGCTCTGGATTACAAGCCATGT
ACATTTTCAATGTGGGTGGCAGCATTAACGCAGCGCGCATTTTCAATCTTGAAACCGCTGTAGAGGCGCTATCCAGTTAC
GCTTTCGAGGGTGACAAAGATAAACTGCAGAAGCTCAAAGAACTCGGTGGAGAGTTTACTCGCATAGCTGACAAAGCATC
AGGAGAATACCAATCCAAACAAGATTTGATGCGTGCTGTACTGGTGGAAGCCATGACCAGCGCCCTCAATTATTGGGAGA
ATGTTTCAGGACAAAGCAAGTTCACGTTTGCAGAACAAAGTGGCCTGTGGCGCGTTTATTTAGACCGTAGCACCTTACAA
ACTCGCACCTTAGACAAGTATTTACGGATTGAGACACTGCCTAAAACACCGCGCTGGAGAACGGTTCTAAACTCGCTTGA
TTACATTCTTGAGTACTGTAAAGAGCCAGGACCCGATCGTACTCATATCGAAATGCAACGCGATAAACTGCAAAAGCTAC
TGACCAGTGAGTGA

Domains

Predicted by InterproScan.

• PAS domain (PAS_8) (927-961)

• Response regulator receiver domain (Response_reg) (773-883)

• His Kinase A (phospho-acceptor) domain (HisKA) (508-573)

• HAMP domain (HAMP) (423-475)

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (622-731)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
chiS	Vibrio cholerae strain A1552	95.922	100	0.959