Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   vm_RS12380 Genome accession   NZ_CP016383
Coordinates   2655489..2656007 (-) Length   172 a.a.
NCBI ID   WP_001130224.1    Uniprot ID   Q401L3
Organism   Vibrio mimicus strain SCCF01     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2650489..2661007
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  vm_RS12355 (VM_12360) rimM 2650569..2651123 (-) 555 WP_000061902.1 ribosome maturation factor RimM -
  vm_RS12360 (VM_12365) rpsP 2651151..2651399 (-) 249 WP_000256449.1 30S ribosomal protein S16 -
  vm_RS12365 (VM_12370) ffh 2651638..2653023 (-) 1386 WP_000462723.1 signal recognition particle protein -
  vm_RS12370 (VM_12375) - 2653236..2654030 (+) 795 WP_000369274.1 cytochrome C assembly family protein -
  vm_RS12375 (VM_12380) - 2654113..2655387 (+) 1275 WP_000340995.1 HlyC/CorC family transporter -
  vm_RS12380 (VM_12385) luxS 2655489..2656007 (-) 519 WP_001130224.1 S-ribosylhomocysteine lyase Regulator
  vm_RS12385 (VM_12390) gshA 2656061..2657635 (-) 1575 WP_070382277.1 glutamate--cysteine ligase -
  vm_RS12390 (VM_12395) - 2657747..2660602 (-) 2856 WP_070382278.1 M16 family metallopeptidase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19005.86 Da        Isoelectric Point: 5.5455

>NTDB_id=187695 vm_RS12380 WP_001130224.1 2655489..2656007(-) (luxS) [Vibrio mimicus strain SCCF01]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTLPNKDILSERGIHTLEHLYAGFMRAHLNGSQVEIIDISP
MGCRTGFYMSLIGAPTEQQVAQAWLAAMQDVLKVESQDKIPELNEYQCGTAAMHSLEEAKAIAQKVIAAGISVNRNDDLA
LPESMLNELKVH

Nucleotide


Download         Length: 519 bp        

>NTDB_id=187695 vm_RS12380 WP_001130224.1 2655489..2656007(-) (luxS) [Vibrio mimicus strain SCCF01]
ATGCCATTATTAGACAGCTTCACCGTCGATCATACTCGTATGAATGCGCCTGCAGTGCGTGTTGCGAAAACCATGCAAAC
CCCAAAAGGCGATACTATTACGGTATTTGATTTGCGTTTTACTCTGCCAAACAAAGATATTTTGTCTGAGCGCGGTATTC
ACACTCTGGAGCATCTGTACGCGGGCTTTATGCGTGCTCACCTTAATGGAAGCCAAGTTGAGATTATCGATATTTCGCCT
ATGGGCTGCCGTACTGGCTTCTATATGAGTTTGATCGGTGCTCCAACTGAGCAGCAAGTGGCACAAGCTTGGTTAGCGGC
AATGCAAGATGTGTTGAAAGTGGAAAGCCAAGATAAGATCCCAGAGCTAAACGAATACCAGTGCGGTACAGCAGCGATGC
ATTCTCTGGAAGAAGCCAAAGCGATTGCGCAGAAAGTGATTGCGGCAGGGATTTCGGTTAACCGTAATGATGACTTGGCG
CTGCCTGAGTCAATGCTGAATGAGCTCAAGGTTCACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q401L3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

95.93

100

0.959

Multiple sequence alignment