Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   vm_RS09995 Genome accession   NZ_CP016383
Coordinates   2146874..2148244 (-) Length   456 a.a.
NCBI ID   WP_081337926.1    Uniprot ID   -
Organism   Vibrio mimicus strain SCCF01     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2141874..2153244
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  vm_RS09960 (VM_09965) moaE 2142584..2143048 (-) 465 WP_070382064.1 molybdopterin synthase catalytic subunit MoaE -
  vm_RS09965 (VM_09970) moaD 2143050..2143295 (-) 246 WP_000598593.1 molybdopterin synthase sulfur carrier subunit -
  vm_RS09970 (VM_09975) moaC 2143292..2143771 (-) 480 WP_000080913.1 cyclic pyranopterin monophosphate synthase MoaC -
  vm_RS09975 (VM_09980) moaB 2143782..2144294 (-) 513 WP_000509704.1 molybdenum cofactor biosynthesis protein B -
  vm_RS09980 (VM_09985) moaA 2144354..2145343 (-) 990 WP_070382601.1 GTP 3',8-cyclase MoaA -
  vm_RS09985 (VM_09990) - 2145650..2146546 (+) 897 WP_070382065.1 YvcK family protein -
  vm_RS09990 (VM_09995) luxU 2146529..2146870 (-) 342 WP_001209532.1 quorum-sensing phosphorelay protein LuxU -
  vm_RS09995 (VM_10000) luxO 2146874..2148244 (-) 1371 WP_081337926.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  vm_RS10000 (VM_10005) uvrB 2148552..2150582 (-) 2031 WP_070382067.1 excinuclease ABC subunit UvrB -
  vm_RS10010 (VM_10015) - 2151378..2152214 (-) 837 WP_070382068.1 LysR family transcriptional regulator -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 50934.32 Da        Isoelectric Point: 6.1362

>NTDB_id=187690 vm_RS09995 WP_081337926.1 2146874..2148244(-) (luxO) [Vibrio mimicus strain SCCF01]
MVEDTASVAALYRSYLTPLDIDINIVGTGRDAIESIGRREPDLILLDLRLPDMTGMDVLHAVKQKSPDVPIVFMTAHGSI
DTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKASKLKNDVDNKNQNYQGFIGSSQTMQAVYRTIDSAASSKASIFITG
ESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATERQGAAEAADGGTLFLDELCEMDLDL
QTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRARGDDVIEIAYSLLGF
MSKEEGKDFIRLSAEVVERFRHYEWPGNVRQLQNVLRNVVVLNEGREITLDMLPPPLNQMPEPVNRALPLANENKVVSVH
EIFPLWMTEKQAIKQAIEACDGNIPRAATYLDVSPSTIYRKLQAWNEKVKEKEKER

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=187690 vm_RS09995 WP_081337926.1 2146874..2148244(-) (luxO) [Vibrio mimicus strain SCCF01]
ATGGTAGAAGATACGGCGTCGGTTGCGGCTCTGTATCGTTCTTATCTCACCCCACTGGATATTGATATCAATATCGTCGG
AACTGGACGCGATGCCATTGAAAGTATTGGCCGCCGCGAACCTGATTTGATCCTGCTTGATCTACGTTTGCCTGATATGA
CGGGTATGGACGTGTTACACGCAGTAAAACAAAAATCGCCCGATGTTCCCATCGTGTTTATGACCGCACATGGCTCGATT
GATACAGCGGTTGAAGCGATGCGCCACGGCGCTCAAGACTTTTTGATTAAGCCTTGTGAAGCGGATCGTCTACGCGTAAC
AGTGAATAACGCGATTCGTAAAGCGTCGAAACTCAAAAACGACGTTGATAATAAAAATCAAAATTACCAAGGCTTTATCG
GCAGCAGCCAAACCATGCAAGCCGTATATCGCACTATCGATTCTGCGGCGAGCAGTAAAGCCAGTATCTTCATTACCGGC
GAAAGTGGTACAGGTAAAGAGGTGTGTGCCGAAGCGATTCATGCTGCGAGTAAACGAGGCGATAAACCGTTTATTGCAAT
TAACTGTGCAGCCATTCCTAAAGATTTGATCGAAAGTGAGCTGTTTGGCCACGTAAAAGGGGCTTTTACGGGAGCGGCGA
CTGAACGCCAAGGGGCTGCTGAAGCTGCTGATGGCGGCACACTGTTTTTGGATGAGCTTTGCGAAATGGATTTGGATTTA
CAGACCAAACTACTGCGCTTTATCCAAACTGGGACTTTCCAAAAGGTCGGCTCTTCCAAAATGAAAAGCGTGGATGTGCG
CTTTGTTTGTGCAACCAACCGCGACCCATGGAAAGAAGTGCAAGAAGGCCGTTTTCGTGAAGACTTGTATTACCGTTTGT
ATGTGATCCCTCTGCATTTACCGCCATTGCGCGCGCGCGGCGATGATGTGATTGAAATTGCCTATTCGCTACTTGGCTTT
ATGTCCAAAGAAGAAGGTAAGGACTTCATACGTTTGTCGGCAGAAGTGGTAGAACGCTTCCGTCACTATGAGTGGCCGGG
TAACGTGCGCCAACTGCAAAACGTATTGCGTAACGTTGTGGTGTTGAATGAAGGGCGTGAAATTACTTTGGATATGTTGC
CACCGCCGCTTAACCAAATGCCAGAGCCAGTTAATCGAGCGTTGCCTCTCGCGAATGAAAATAAAGTCGTGTCGGTGCAT
GAAATTTTCCCGTTGTGGATGACGGAGAAGCAAGCCATAAAACAGGCTATTGAAGCTTGTGATGGCAATATTCCTCGTGC
GGCGACGTATTTGGATGTCAGCCCATCGACGATTTACCGCAAGCTTCAAGCTTGGAATGAGAAAGTCAAAGAAAAAGAGA
AGGAGCGGTAA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(133-298)

Bacterial regulatory protein, Fis family (HTH_8)

(405-445)

Response regulator receiver domain (Response_reg)

(2-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

97.588

100

0.976
  pilR Pseudomonas aeruginosa PAK

38

98.684

0.375

Multiple sequence alignment