Detailed information    

insolico Bioinformatically predicted

Overview

Name   hapR   Type   Regulator
Locus tag   vm_RS12255 Genome accession   NZ_CP016383
Coordinates   2634573..2635184 (+) Length   203 a.a.
NCBI ID   WP_000340102.1    Uniprot ID   -
Organism   Vibrio mimicus strain SCCF01     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2629573..2640184
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  vm_RS12235 (VM_12240) - 2630075..2630992 (-) 918 WP_000271061.1 ABC transporter ATP-binding protein -
  vm_RS12240 (VM_12245) - 2631183..2632835 (-) 1653 WP_000484920.1 SulP family inorganic anion transporter -
  vm_RS12245 (VM_12250) can 2632984..2633652 (+) 669 WP_001114113.1 carbonate dehydratase -
  vm_RS12250 (VM_12255) hpt 2633746..2634279 (-) 534 WP_000683346.1 hypoxanthine phosphoribosyltransferase -
  vm_RS12255 (VM_12260) hapR 2634573..2635184 (+) 612 WP_000340102.1 quorum-sensing master transcriptional regulator HapR Regulator
  vm_RS12260 (VM_12265) rsmI 2635302..2636168 (-) 867 WP_070382270.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  vm_RS12265 (VM_12270) - 2636238..2638043 (+) 1806 WP_070382271.1 penicillin-binding protein activator -
  vm_RS12270 (VM_12275) - 2638030..2638398 (+) 369 WP_080551915.1 YraN family protein -
  vm_RS12275 (VM_12280) - 2638402..2638992 (+) 591 WP_000887295.1 phosphoheptose isomerase -
  vm_RS12280 (VM_12285) - 2638995..2639564 (+) 570 WP_070382272.1 BON domain-containing protein -
  vm_RS12285 (VM_12290) sspB 2639633..2640106 (-) 474 WP_070382273.1 ClpXP protease specificity-enhancing factor -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 23619.27 Da        Isoelectric Point: 6.3371

>NTDB_id=187694 vm_RS12255 WP_000340102.1 2634573..2635184(+) (hapR) [Vibrio mimicus strain SCCF01]
MDASIEKRPRTRLSPQKRKLQLMEIALEVFATRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDDVLNFVVRQYSNFL
TDHIDLDLEAKSNLQTLCKEMVKLAMTDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLIKNMFIKAMERGELCEKHDV
DNMASLFHGIFYSIFLQVNRLGEQEAVYKLVDSYLNMLCIYKN

Nucleotide


Download         Length: 612 bp        

>NTDB_id=187694 vm_RS12255 WP_000340102.1 2634573..2635184(+) (hapR) [Vibrio mimicus strain SCCF01]
ATGGACGCATCAATCGAAAAACGCCCTCGGACTCGGCTATCTCCACAAAAACGTAAACTACAACTGATGGAAATCGCATT
AGAAGTGTTTGCAACTCGCGGTATTGGCCGCGGCGGTCATGCCGACATCGCTGAAATTGCGCAAGTTTCAGTGGCGACAG
TATTTAACTACTTCCCAACTCGTGAAGATCTGGTCGACGACGTACTGAACTTTGTGGTTCGTCAGTATTCCAACTTCCTT
ACTGATCACATCGATCTAGATTTAGAAGCTAAAAGCAACCTACAAACACTGTGCAAAGAAATGGTGAAACTCGCCATGAC
TGACTGCCACTGGCTAAAAGTATGGTTTGAATGGAGTGCTTCAACTCGTGATGAAGTTTGGCCGTTGTTTGTTTCGACCA
ACCGCACCAACCAGTTACTGATCAAAAACATGTTCATCAAAGCGATGGAGCGTGGTGAATTGTGTGAGAAACACGATGTA
GACAATATGGCGAGCCTGTTCCACGGCATCTTCTACTCTATCTTCCTACAAGTAAATCGCTTGGGCGAGCAGGAAGCAGT
GTATAAGTTAGTCGATAGCTATCTCAACATGCTGTGTATCTACAAAAACTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(23-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hapR Vibrio cholerae C6706

96.552

100

0.966
  hapR Vibrio cholerae strain A1552

96.552

100

0.966
  opaR Vibrio parahaemolyticus RIMD 2210633

73.737

97.537

0.719

Multiple sequence alignment