Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   vm_RS09085 Genome accession   NZ_CP016383
Coordinates   1955463..1956053 (-) Length   196 a.a.
NCBI ID   WP_070381964.1    Uniprot ID   -
Organism   Vibrio mimicus strain SCCF01     
Function   master regulator of natural competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1950463..1961053
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  vm_RS09060 (VM_09065) - 1950717..1951982 (-) 1266 WP_070381962.1 DUF945 family protein -
  vm_RS09065 (VM_09070) - 1952205..1954154 (+) 1950 WP_070381963.1 ATP-binding protein -
  vm_RS09070 (VM_09075) - 1954151..1954648 (+) 498 WP_001031958.1 response regulator -
  vm_RS09080 (VM_09085) - 1954839..1955393 (+) 555 WP_001232586.1 hypothetical protein -
  vm_RS09085 (VM_09090) tfoX 1955463..1956053 (-) 591 WP_070381964.1 TfoX/Sxy family DNA transformation protein Regulator
  vm_RS09090 (VM_09095) - 1956431..1957351 (+) 921 WP_000019005.1 HDOD domain-containing protein -
  vm_RS09095 (VM_09100) - 1957372..1958277 (+) 906 WP_000948494.1 lysine exporter LysO family protein -
  vm_RS09100 (VM_09105) - 1958496..1959005 (+) 510 WP_000826837.1 hypothetical protein -
  vm_RS09105 (VM_09110) panP 1959115..1960761 (+) 1647 WP_070381965.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 22906.11 Da        Isoelectric Point: 6.8683

>NTDB_id=187689 vm_RS09085 WP_070381964.1 1955463..1956053(-) (tfoX) [Vibrio mimicus strain SCCF01]
MNEQQFFDYVIKFGAYQKRSMFGGIGLFQHDAMYVLVSDDRIFVRGGEELDPELVALGCEKYRHVKKQTTATVNYYDVTD
LYERNHPELDSIIERSIQFSVNQREFQRSAASRRLRDLPNMQLTLERMVKKAGIDDVETFMSLGAPEVFNKVREAYGSDV
DVKLLWKFAGAIEGIHWKLLQEPRKRQLLESCQQRQ

Nucleotide


Download         Length: 591 bp        

>NTDB_id=187689 vm_RS09085 WP_070381964.1 1955463..1956053(-) (tfoX) [Vibrio mimicus strain SCCF01]
ATGAATGAGCAACAGTTTTTCGACTACGTAATTAAGTTTGGCGCATACCAAAAACGCTCTATGTTTGGCGGAATTGGACT
ATTTCAACACGACGCTATGTATGTGTTGGTCAGTGATGATCGTATTTTTGTTCGCGGTGGCGAAGAACTCGATCCGGAGC
TGGTGGCTTTAGGCTGTGAAAAATATCGCCATGTAAAAAAACAGACCACGGCAACAGTAAATTATTACGATGTCACTGAT
CTCTATGAACGAAATCATCCAGAGCTAGACTCTATCATCGAACGTTCTATTCAATTTTCGGTAAATCAGCGCGAATTTCA
GCGCTCAGCCGCAAGTCGTCGTTTACGTGACTTGCCAAACATGCAGCTCACTCTTGAACGTATGGTGAAAAAAGCGGGTA
TTGATGATGTCGAAACGTTTATGAGCTTGGGCGCACCAGAAGTATTTAATAAAGTGCGTGAAGCGTATGGCAGTGATGTC
GATGTGAAATTGCTATGGAAATTTGCAGGAGCGATTGAGGGCATTCATTGGAAGCTTCTGCAAGAGCCGCGTAAACGCCA
ATTGCTTGAAAGCTGTCAGCAACGTCAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(112-190)

TfoX N-terminal domain (TfoX_N)

(10-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

95.897

99.49

0.954
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

95.897

99.49

0.954
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

95.897

99.49

0.954
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

95.897

99.49

0.954
  tfoX Vibrio cholerae strain A1552

95.897

99.49

0.954
  tfoX Vibrio campbellii strain DS40M4

69.43

98.469

0.684
  tfoX Vibrio parahaemolyticus RIMD 2210633

69.43

98.469

0.684
  tfoX Aliivibrio fischeri ES114

59.574

95.918

0.571

Multiple sequence alignment