Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BBH56_RS07370 Genome accession   NZ_CP016382
Coordinates   1501039..1501497 (-) Length   152 a.a.
NCBI ID   WP_144347969.1    Uniprot ID   -
Organism   Spiribacter roseus strain SSL50     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1496039..1506497
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBH56_RS07345 (BBH56_07335) deoD 1496137..1496850 (-) 714 WP_069134072.1 purine-nucleoside phosphorylase -
  BBH56_RS07350 (BBH56_07340) - 1496997..1497596 (+) 600 WP_148122423.1 HAD family hydrolase -
  BBH56_RS07355 (BBH56_07345) - 1497598..1500231 (+) 2634 WP_148122424.1 AMP-binding protein -
  BBH56_RS07360 (BBH56_07350) - 1500248..1500592 (-) 345 WP_148122425.1 addiction module antidote protein -
  BBH56_RS07365 (BBH56_07355) - 1500596..1500886 (-) 291 WP_148122426.1 type II toxin-antitoxin system RelE/ParE family toxin -
  BBH56_RS07370 (BBH56_07360) ssb 1501039..1501497 (-) 459 WP_144347969.1 single-stranded DNA-binding protein Machinery gene
  BBH56_RS07375 (BBH56_07365) - 1501600..1503324 (-) 1725 WP_148122427.1 bifunctional sulfate adenylyltransferase/adenylylsulfate kinase -
  BBH56_RS07380 (BBH56_07370) - 1503321..1504559 (-) 1239 WP_318262524.1 MFS transporter -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 16360.24 Da        Isoelectric Point: 4.7790

>NTDB_id=187661 BBH56_RS07370 WP_144347969.1 1501039..1501497(-) (ssb) [Spiribacter roseus strain SSL50]
MARGVNKVILIGNLGADPEVRYSAAGSAITNVRLATTDQWKDRQTGEQQEKTEWHRIVFFGRLAEIAGEYLKKGSKIFIE
GRLQTRKWQGQDGQDKYTTEIVANDMQMLDGAGGGGMGGGAGGGMKQSAPAASQEPAPQTAPVDDFDDDIPF

Nucleotide


Download         Length: 459 bp        

>NTDB_id=187661 BBH56_RS07370 WP_144347969.1 1501039..1501497(-) (ssb) [Spiribacter roseus strain SSL50]
ATGGCGCGTGGAGTCAACAAAGTCATTCTCATCGGTAATCTCGGCGCCGATCCCGAGGTCCGCTACTCAGCTGCCGGCAG
CGCCATCACCAATGTACGGCTGGCGACCACCGATCAGTGGAAGGATCGCCAGACCGGCGAGCAGCAGGAAAAAACCGAGT
GGCATCGCATCGTGTTCTTCGGACGCCTGGCCGAGATCGCGGGTGAGTACCTGAAAAAGGGCTCGAAGATCTTCATCGAG
GGCCGCCTGCAGACCCGCAAATGGCAGGGCCAGGACGGTCAGGACAAGTACACGACGGAAATCGTGGCCAACGACATGCA
GATGCTCGATGGCGCCGGCGGTGGCGGCATGGGCGGTGGTGCCGGCGGCGGCATGAAGCAGTCCGCGCCCGCAGCAAGCC
AGGAGCCGGCCCCACAGACCGCTCCGGTGGATGATTTCGACGACGACATCCCGTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

53.672

100

0.625
  ssb Glaesserella parasuis strain SC1401

47.753

100

0.559
  ssb Neisseria meningitidis MC58

46.243

100

0.526
  ssb Neisseria gonorrhoeae MS11

46.243

100

0.526

Multiple sequence alignment