Detailed information
Bioinformatically predicted
Overview
| Name | ruvB | Type | Machinery gene |
| Locus tag | B6R96_RS28655 | Genome accession | NZ_CP020555 |
| Coordinates | 6365163..6366221 (+) | Length | 352 a.a. |
| NCBI ID | WP_030387188.1 | Uniprot ID | - |
| Organism | Streptomyces sp. Sge12 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 6360163..6371221
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| B6R96_RS28625 (B6R96_28625) | - | 6360788..6361330 (+) | 543 | WP_030387183.1 | membrane protein | - |
| B6R96_RS28630 (B6R96_28630) | pdxS | 6361479..6362396 (+) | 918 | WP_030010552.1 | pyridoxal 5'-phosphate synthase lyase subunit PdxS | - |
| B6R96_RS28635 (B6R96_28635) | pdxT | 6362403..6362996 (+) | 594 | WP_030387184.1 | pyridoxal 5'-phosphate synthase glutaminase subunit PdxT | - |
| B6R96_RS28640 (B6R96_28640) | - | 6363054..6363806 (+) | 753 | WP_030387185.1 | YebC/PmpR family DNA-binding transcriptional regulator | - |
| B6R96_RS28645 (B6R96_28645) | ruvC | 6363943..6364473 (+) | 531 | WP_030387186.1 | crossover junction endodeoxyribonuclease RuvC | - |
| B6R96_RS28650 (B6R96_28650) | ruvA | 6364470..6365102 (+) | 633 | WP_053702107.1 | Holliday junction branch migration protein RuvA | - |
| B6R96_RS28655 (B6R96_28655) | ruvB | 6365163..6366221 (+) | 1059 | WP_030387188.1 | Holliday junction branch migration DNA helicase RuvB | Machinery gene |
| B6R96_RS28660 (B6R96_28660) | yajC | 6366387..6366863 (+) | 477 | WP_030387189.1 | preprotein translocase subunit YajC | - |
| B6R96_RS28665 (B6R96_28665) | secD | 6367018..6368808 (+) | 1791 | WP_081524030.1 | protein translocase subunit SecD | - |
| B6R96_RS28670 (B6R96_28670) | secF | 6368812..6369867 (+) | 1056 | WP_030387191.1 | protein translocase subunit SecF | - |
| B6R96_RS28675 (B6R96_28675) | - | 6369876..6370418 (+) | 543 | WP_107475755.1 | adenine phosphoribosyltransferase | - |
Sequence
Protein
Download Length: 352 a.a. Molecular weight: 37577.89 Da Isoelectric Point: 4.9591
>NTDB_id=187633 B6R96_RS28655 WP_030387188.1 6365163..6366221(+) (ruvB) [Streptomyces sp. Sge12]
MNWDDESDRIVAPAADGEDTAVEAALRPKDLGEFVGQEKVRQQLDLVLKAARQRGATADHVLLSGAPGLGKTTLSMIIAA
EMGAPIRITSGPAIQHAGDLAAILSSLQEGEVLFLDEIHRMSRPAEEMLYMAMEDFRVDVIVGKGPGATAIPLELPPFTL
VGATTRAGLLPPPLRDRFGFTGHMEFYAPEELERVIHRSARLLDVEIDTAGAAEIAGRSRGTPRIANRLLRRVRDYAQVR
ADGVINREVAGTALQVYEVDGRGLDRLDRAVLEALLKLFGGGPVGLSTLAVAVGEERETVEEVAEPFLVREGLLARTPRG
RVATPAAWAHLGLVPPQQGGSGSSGQQGLFGA
MNWDDESDRIVAPAADGEDTAVEAALRPKDLGEFVGQEKVRQQLDLVLKAARQRGATADHVLLSGAPGLGKTTLSMIIAA
EMGAPIRITSGPAIQHAGDLAAILSSLQEGEVLFLDEIHRMSRPAEEMLYMAMEDFRVDVIVGKGPGATAIPLELPPFTL
VGATTRAGLLPPPLRDRFGFTGHMEFYAPEELERVIHRSARLLDVEIDTAGAAEIAGRSRGTPRIANRLLRRVRDYAQVR
ADGVINREVAGTALQVYEVDGRGLDRLDRAVLEALLKLFGGGPVGLSTLAVAVGEERETVEEVAEPFLVREGLLARTPRG
RVATPAAWAHLGLVPPQQGGSGSSGQQGLFGA
Nucleotide
Download Length: 1059 bp
>NTDB_id=187633 B6R96_RS28655 WP_030387188.1 6365163..6366221(+) (ruvB) [Streptomyces sp. Sge12]
GTGAACTGGGACGACGAGAGCGACCGCATTGTCGCGCCGGCGGCAGACGGCGAGGACACCGCCGTCGAGGCGGCCCTGCG
GCCCAAGGACCTCGGCGAGTTCGTCGGCCAGGAGAAGGTCCGCCAGCAGCTCGACCTCGTCCTCAAGGCGGCCCGGCAGC
GCGGCGCCACCGCCGATCACGTCCTGCTCTCCGGCGCGCCCGGCCTCGGCAAGACCACCCTCTCCATGATCATCGCGGCC
GAGATGGGCGCGCCCATCCGCATCACCTCCGGCCCCGCCATCCAGCACGCCGGCGACCTCGCCGCGATCCTCTCCTCCCT
CCAGGAGGGCGAGGTCCTCTTCCTCGACGAGATCCACCGCATGTCCCGGCCCGCCGAGGAGATGCTGTACATGGCCATGG
AGGACTTCCGCGTCGACGTGATCGTCGGCAAGGGGCCCGGAGCCACCGCGATCCCCCTGGAGCTGCCGCCCTTCACACTG
GTCGGCGCCACCACCCGGGCCGGACTGCTGCCCCCGCCGCTGCGGGACCGCTTCGGCTTCACCGGGCACATGGAGTTCTA
CGCCCCCGAGGAGCTGGAACGCGTCATCCACCGCTCCGCCCGCCTCCTCGACGTGGAGATCGACACCGCCGGCGCCGCCG
AGATCGCCGGCCGCTCCCGCGGCACCCCGCGCATCGCCAACCGCCTGCTGCGCCGCGTCCGCGACTACGCCCAGGTCCGG
GCCGACGGTGTGATCAACCGCGAGGTGGCCGGTACGGCCCTCCAGGTCTACGAGGTGGACGGGCGCGGCCTCGACCGACT
GGATCGGGCCGTTCTGGAGGCCCTCCTCAAGCTCTTCGGCGGCGGCCCGGTGGGCCTGTCGACCCTCGCCGTGGCGGTCG
GCGAGGAGCGGGAGACCGTGGAGGAGGTCGCGGAGCCCTTCCTGGTCCGCGAGGGGCTGCTCGCGCGCACCCCCCGGGGA
CGGGTCGCGACGCCTGCCGCATGGGCTCACCTGGGACTCGTACCGCCGCAGCAGGGCGGGAGTGGATCAAGCGGACAACA
GGGCTTGTTCGGGGCCTGA
GTGAACTGGGACGACGAGAGCGACCGCATTGTCGCGCCGGCGGCAGACGGCGAGGACACCGCCGTCGAGGCGGCCCTGCG
GCCCAAGGACCTCGGCGAGTTCGTCGGCCAGGAGAAGGTCCGCCAGCAGCTCGACCTCGTCCTCAAGGCGGCCCGGCAGC
GCGGCGCCACCGCCGATCACGTCCTGCTCTCCGGCGCGCCCGGCCTCGGCAAGACCACCCTCTCCATGATCATCGCGGCC
GAGATGGGCGCGCCCATCCGCATCACCTCCGGCCCCGCCATCCAGCACGCCGGCGACCTCGCCGCGATCCTCTCCTCCCT
CCAGGAGGGCGAGGTCCTCTTCCTCGACGAGATCCACCGCATGTCCCGGCCCGCCGAGGAGATGCTGTACATGGCCATGG
AGGACTTCCGCGTCGACGTGATCGTCGGCAAGGGGCCCGGAGCCACCGCGATCCCCCTGGAGCTGCCGCCCTTCACACTG
GTCGGCGCCACCACCCGGGCCGGACTGCTGCCCCCGCCGCTGCGGGACCGCTTCGGCTTCACCGGGCACATGGAGTTCTA
CGCCCCCGAGGAGCTGGAACGCGTCATCCACCGCTCCGCCCGCCTCCTCGACGTGGAGATCGACACCGCCGGCGCCGCCG
AGATCGCCGGCCGCTCCCGCGGCACCCCGCGCATCGCCAACCGCCTGCTGCGCCGCGTCCGCGACTACGCCCAGGTCCGG
GCCGACGGTGTGATCAACCGCGAGGTGGCCGGTACGGCCCTCCAGGTCTACGAGGTGGACGGGCGCGGCCTCGACCGACT
GGATCGGGCCGTTCTGGAGGCCCTCCTCAAGCTCTTCGGCGGCGGCCCGGTGGGCCTGTCGACCCTCGCCGTGGCGGTCG
GCGAGGAGCGGGAGACCGTGGAGGAGGTCGCGGAGCCCTTCCTGGTCCGCGAGGGGCTGCTCGCGCGCACCCCCCGGGGA
CGGGTCGCGACGCCTGCCGCATGGGCTCACCTGGGACTCGTACCGCCGCAGCAGGGCGGGAGTGGATCAAGCGGACAACA
GGGCTTGTTCGGGGCCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ruvB | Bacillus subtilis subsp. subtilis str. 168 |
53.03 |
93.75 |
0.497 |
| ruvB | Streptococcus pneumoniae TIGR4 |
52.469 |
92.045 |
0.483 |
| ruvB | Streptococcus pneumoniae R6 |
52.469 |
92.045 |
0.483 |
| ruvB | Streptococcus pneumoniae D39 |
52.469 |
92.045 |
0.483 |
| ruvB | Synechocystis sp. PCC 6803 |
52.548 |
89.205 |
0.469 |
| ruvB | Helicobacter pylori 26695 |
49.53 |
90.625 |
0.449 |