Detailed information NTG0187627

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: TK34_RS02390
• Genome accession: NZ_CP016380
• Coordinates: 510854..511726 (-)
• Length: 290 a.a.
• NCBI ID: WP_065475375.1
• Uniprot ID: -
• Organism: Aeromonas hydrophila strain AHNIH1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 505854..516726

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
TK34_RS02360 (TK34_02335)	-	506547..507731 (+)	1185	WP_065475364.1	tetratricopeptide repeat protein	-
TK34_RS02365 (TK34_02340)	mutT	507740..508153 (+)	414	WP_187172441.1	8-oxo-dGTP diphosphatase MutT	-
TK34_RS02370 (TK34_02345)	-	508185..509147 (-)	963	WP_065475368.1	IS1595 family transposase	-
TK34_RS02375 (TK34_02350)	yacG	509256..509450 (-)	195	WP_005305661.1	DNA gyrase inhibitor YacG	-
TK34_RS02380 (TK34_02355)	zapD	509460..510182 (-)	723	WP_065475370.1	cell division protein ZapD	-
TK34_RS02385 (TK34_02360)	coaE	510220..510834 (-)	615	WP_065475372.1	dephospho-CoA kinase	-
TK34_RS02390 (TK34_02365)	pilD	510854..511726 (-)	873	WP_065475375.1	prepilin peptidase	Machinery gene
TK34_RS02395 (TK34_02370)	pilC	511749..512990 (-)	1242	WP_017409439.1	type II secretion system F family protein	Machinery gene
TK34_RS02400 (TK34_02375)	pilB	513106..514812 (-)	1707	WP_029302067.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
TK34_RS22920 (TK34_02380)	tapA	514816..515244 (-)	429	WP_081304776.1	type IVa pilus major pilin TapA	-
TK34_RS02410 (TK34_02390)	nadC	515567..516424 (-)	858	WP_065475376.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32484.77 Da
• Isoelectric Point: 6.7410

>NTDB_id=187627 TK34_RS02390 WP_065475375.1 510854..511726(-) (pilD) [Aeromonas hydrophila strain AHNIH1]
MLLITDVFHSLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYLGYFNPETQPQQEERYNLMVPRSACPHCGHA
ITAMENIPLLSWLWLKGRCRECQAPISARYPLVELLTALLSLVVAATFAPGWGLLAALLLTWVLVALTFIDLDKMLLPDQ
LTLPLLWGGLLFNLTGGFAPLADAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSL
VGAFIGIGLILLRNHHQNKPIPFGPYLAIAGWIALLWGDTITRWYLTTFL

Nucleotide

• Length: 873 bp

>NTDB_id=187627 TK34_RS02390 WP_065475375.1 510854..511726(-) (pilD) [Aeromonas hydrophila strain AHNIH1]
ATGTTGCTGATCACTGACGTTTTTCACAGCCTGCCCTGGCTCTATTTCTCGCTGGTATTCCTCTTTTCCCTGATGATCGG
CAGTTTTCTCAACGTGGTCATCCATCGCCTGCCCATTATGCTGGAGCGGGAGTGGCAGGCCGAATATCTCGGCTATTTCA
ATCCAGAGACACAGCCGCAGCAGGAAGAACGCTACAACCTGATGGTGCCGCGTTCTGCCTGTCCCCATTGTGGCCACGCC
ATCACGGCCATGGAGAACATCCCCCTGCTCAGCTGGCTCTGGCTCAAGGGGCGCTGCCGTGAATGCCAGGCCCCTATCTC
GGCCCGTTATCCTCTGGTGGAGCTGCTGACGGCCCTGCTCTCGCTGGTCGTCGCCGCGACATTCGCACCGGGCTGGGGCT
TGCTGGCCGCCCTGCTGCTCACCTGGGTACTGGTGGCGCTCACTTTCATCGATCTGGACAAGATGCTGCTGCCGGATCAG
CTGACCCTGCCACTGCTGTGGGGCGGCCTGTTGTTCAATCTGACAGGGGGATTTGCGCCGCTGGCCGATGCGGTGATCGG
CGCCATGGCCGGCTATCTGGTGCTCTGGAGCCTCTACTGGGCCTTCAAGCTGCTGACCGGCAAGGAAGGGATGGGCTATG
GCGACTTCAAGCTGTTGGCGGCGCTGGGAGCCTGGCTCGGCTGGCAGGCACTGCCCATCGTGTTGCTGCTCTCGTCGCTG
GTTGGCGCTTTCATCGGGATTGGTCTCATTCTGCTGCGCAACCATCATCAGAACAAACCCATCCCCTTCGGCCCCTATCT
GGCCATCGCCGGCTGGATCGCGCTGCTGTGGGGCGATACCATCACCCGCTGGTACCTCACGACGTTTCTCTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-128)

• Type IV leader peptidase family (Peptidase_A24) (139-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	61.324	98.966	0.607
pilD	Vibrio campbellii strain DS40M4	55.749	98.966	0.552
pilD	Acinetobacter baumannii D1279779	54.225	97.931	0.531
pilD	Acinetobacter nosocomialis M2	54.225	97.931	0.531
pilD	Neisseria gonorrhoeae MS11	48.718	94.138	0.459