Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   BA894_RS05510 Genome accession   NZ_CP016351
Coordinates   1209059..1211317 (+) Length   752 a.a.
NCBI ID   WP_065296583.1    Uniprot ID   -
Organism   Vibrio natriegens strain CCUG 16374     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1204059..1216317
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BA894_RS05485 (BA894_05485) - 1204412..1204981 (-) 570 WP_065296580.1 PilZ domain-containing protein -
  BA894_RS05490 (BA894_05490) lolC 1205233..1206441 (+) 1209 WP_065296581.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  BA894_RS05495 (BA894_05495) lolD 1206434..1207141 (+) 708 WP_020332845.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  BA894_RS05500 (BA894_05500) lolE 1207144..1208388 (+) 1245 WP_065296582.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  BA894_RS05505 (BA894_05505) - 1208541..1209050 (-) 510 WP_014231286.1 DUF2062 domain-containing protein -
  BA894_RS05510 (BA894_05510) comEC 1209059..1211317 (+) 2259 WP_065296583.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  BA894_RS05515 (BA894_05515) msbA 1211349..1213097 (+) 1749 WP_014231288.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  BA894_RS05520 (BA894_05520) lpxK 1213101..1214108 (+) 1008 WP_065296584.1 tetraacyldisaccharide 4'-kinase -
  BA894_RS05525 (BA894_05525) - 1214089..1214268 (+) 180 WP_014231290.1 Trm112 family protein -
  BA894_RS05530 (BA894_05530) kdsB 1214268..1215026 (+) 759 WP_014231291.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 752 a.a.        Molecular weight: 84772.76 Da        Isoelectric Point: 8.5324

>NTDB_id=187247 BA894_RS05510 WP_065296583.1 1209059..1211317(+) (comEC) [Vibrio natriegens strain CCUG 16374]
MTLSEKSCTLALFVASIVSSAWWPIMPDWRWLLLGIITTGSIIKLRRGLISIGVILGLMVVIIHGNVLEYQRQALFNVGE
NSTITGKVDSSFNQISHGYEGLVTIKQVGDQSLLPFLKPKVRFITTFPIPVNSEFTTTAQVKPIIGLRNEAGFDAEKQAM
GNGILARMIVTGDAHWIIRNGRYVRQSIINLVMDDISHLDHFPLISALVFADRSWLSGDDWQGLRDSGLLHLASISGLHI
GMAFSFGFWLGVSVRSVFPRYQVVPSITGLTVALCYAWLADFSLPTTRAVSVCVIYIVLKYFLVHWSTWRVLLLAVAFQL
LIQPFACFSMSFWLSYLSVGMVLLVINFVRFNNSSWRGKLRTLFVTQLALSVFVIPISGYFFSGFSLSSIAYNLVFIPWF
GFVVVPLMFIALSTSLLLPAFSPIVWQLMDFSLWPLSESLQYAFGTWQPLSIELTWILFSLYTFLVLKRLLLWQGWLLMC
VITIIVSGLNGRKSTSWRIDVLDVGHGLAVLVEKEGKALIYDTGKSWPEGSVAEQVIIPVLHRRGFREVDTLVLSHSDND
HAGGRQVIETHLKPSYKRSSQDFSGYQPCVSGDNWTWQQLDIEVLWPPQMVTRAYNPHSCVFRLRDRESDFSMLFTGDIE
SISEWILLREPEKLSSDVMLVPHHGSKSSSNPLFIHAVSPTLAVASLAKNNQWGMPADKVVTSYLNAGSLWLDTGEGGQV
TIRVTKDKWDFVTKRNDTFEPWYRQMLRKGLE

Nucleotide


Download         Length: 2259 bp        

>NTDB_id=187247 BA894_RS05510 WP_065296583.1 1209059..1211317(+) (comEC) [Vibrio natriegens strain CCUG 16374]
ATGACTCTCTCAGAAAAAAGTTGCACCTTGGCGTTATTTGTCGCAAGCATTGTTTCATCGGCATGGTGGCCGATAATGCC
AGATTGGCGCTGGCTGCTGCTGGGAATAATTACCACTGGTTCAATAATTAAATTACGTCGTGGCTTAATTAGCATAGGCG
TAATTTTGGGCTTAATGGTAGTCATCATCCACGGCAATGTATTGGAGTATCAGCGACAAGCCCTTTTTAATGTAGGGGAG
AATAGTACCATAACTGGCAAAGTTGACAGCTCTTTTAATCAAATAAGTCATGGATATGAAGGACTCGTGACGATAAAACA
AGTGGGTGATCAAAGTCTGTTACCTTTTCTTAAACCTAAAGTCCGTTTTATCACCACCTTTCCTATCCCTGTTAACAGTG
AATTTACGACCACGGCTCAGGTAAAGCCCATTATTGGGTTACGTAACGAAGCGGGTTTCGACGCTGAAAAGCAGGCAATG
GGAAATGGTATTTTAGCCAGAATGATTGTGACTGGCGATGCGCACTGGATTATTCGTAACGGACGTTATGTACGTCAGTC
GATAATCAACCTGGTAATGGATGATATCTCCCATCTAGACCACTTTCCGTTAATCAGTGCTCTGGTATTTGCTGATAGAA
GCTGGCTTTCTGGTGATGACTGGCAAGGACTGAGAGATAGTGGATTATTGCACCTGGCCTCTATCTCCGGGCTGCACATT
GGAATGGCTTTTAGCTTTGGTTTTTGGCTCGGTGTAAGTGTTCGCTCCGTTTTCCCGCGTTATCAAGTGGTGCCTTCAAT
CACGGGGTTAACCGTCGCGCTATGTTATGCCTGGCTCGCTGATTTTTCTCTGCCAACCACTCGCGCCGTATCGGTTTGTG
TCATCTACATTGTTCTAAAGTACTTTTTGGTTCACTGGAGTACCTGGCGAGTGTTGCTACTGGCGGTTGCTTTTCAGTTA
CTTATTCAGCCTTTCGCATGTTTTAGTATGAGTTTCTGGTTGTCTTACCTTTCTGTAGGTATGGTGCTGTTGGTCATTAA
CTTTGTGCGGTTCAATAACAGCAGCTGGCGAGGAAAACTGCGAACCTTGTTTGTGACTCAACTTGCCTTGAGTGTATTTG
TCATACCTATCAGTGGCTATTTTTTCTCTGGTTTCAGCTTATCGTCCATCGCTTATAACCTTGTGTTTATCCCATGGTTT
GGGTTTGTCGTCGTTCCTTTAATGTTTATCGCGTTATCTACTTCTCTATTGCTACCCGCATTCTCGCCAATAGTTTGGCA
ATTGATGGATTTCTCTTTATGGCCGTTAAGTGAATCTCTTCAGTATGCCTTTGGTACGTGGCAACCATTGTCGATAGAAC
TTACGTGGATACTGTTTTCTCTCTATACTTTCTTGGTTTTGAAGCGGTTATTGCTTTGGCAGGGTTGGCTATTGATGTGC
GTTATTACCATCATCGTTTCAGGTCTAAATGGACGAAAAAGTACCAGTTGGCGAATCGATGTTCTCGATGTCGGTCATGG
TCTTGCCGTTCTGGTAGAAAAAGAGGGTAAAGCTCTGATTTACGATACTGGAAAATCCTGGCCGGAGGGCAGCGTTGCGG
AGCAGGTGATTATACCTGTGTTACATCGCAGAGGATTTAGAGAGGTTGATACCTTGGTTCTCAGTCACTCGGACAATGAC
CACGCAGGAGGGAGGCAAGTGATTGAAACGCACCTCAAGCCGAGCTATAAACGCAGCAGCCAAGATTTTAGTGGGTATCA
ACCTTGTGTGAGCGGTGATAATTGGACGTGGCAGCAACTCGATATCGAAGTGCTCTGGCCACCCCAAATGGTCACTCGAG
CCTACAACCCTCACTCGTGTGTCTTTAGACTCAGAGACCGAGAATCTGATTTTTCCATGCTGTTCACGGGTGATATTGAA
TCGATTAGCGAGTGGATACTTCTTCGTGAGCCTGAAAAATTATCTAGTGATGTGATGCTCGTTCCTCATCACGGTAGCAA
AAGTTCCTCCAATCCTCTTTTTATCCATGCAGTCTCTCCAACATTAGCGGTGGCATCACTGGCGAAAAACAATCAGTGGG
GAATGCCTGCCGATAAGGTAGTAACCTCGTATCTCAATGCAGGGTCACTATGGCTTGATACTGGTGAGGGTGGGCAAGTT
ACTATCCGAGTAACGAAAGATAAGTGGGATTTTGTAACCAAACGCAATGATACATTTGAGCCTTGGTATAGGCAGATGCT
GCGTAAGGGGTTAGAATGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(504-681)

Competence protein (Competence)

(208-473)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio parahaemolyticus RIMD 2210633

66.223

100

0.662
  comEC Vibrio campbellii strain DS40M4

63.165

100

0.632
  comEC Vibrio cholerae strain A1552

38.228

100

0.384

Multiple sequence alignment