Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BA890_RS12980 Genome accession   NZ_CP016345
Coordinates   2834560..2835099 (-) Length   179 a.a.
NCBI ID   WP_014233117.1    Uniprot ID   A0AAN1CWJ2
Organism   Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 strain ATCC 14048     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2829560..2840099
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BA890_RS12960 (BA890_12960) - 2829884..2830216 (-) 333 WP_020334514.1 hypothetical protein -
  BA890_RS12965 (BA890_12965) gspM 2830209..2830859 (-) 651 WP_020334515.1 type II secretion system protein GspM -
  BA890_RS12970 (BA890_12970) - 2830856..2832301 (-) 1446 WP_020334516.1 hypothetical protein -
  BA890_RS12975 (BA890_12975) csrD 2832313..2834322 (-) 2010 WP_031334688.1 RNase E specificity factor CsrD -
  BA890_RS12980 (BA890_12980) ssb 2834560..2835099 (-) 540 WP_014233117.1 single-stranded DNA-binding protein Machinery gene
  BA890_RS12985 (BA890_12985) qstR 2835377..2836021 (+) 645 WP_020334518.1 LuxR C-terminal-related transcriptional regulator Regulator
  BA890_RS12990 (BA890_12990) galU 2836201..2837073 (+) 873 WP_014233119.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  BA890_RS12995 (BA890_12995) uvrA 2837222..2840044 (+) 2823 WP_020334520.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 19685.83 Da        Isoelectric Point: 5.2257

>NTDB_id=187132 BA890_RS12980 WP_014233117.1 2834560..2835099(-) (ssb) [Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 strain ATCC 14048]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSDSWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGAPAMGGQAPQQGGWGQPQQPAQPQYNAPQQQAPKQSAPQ
QPQQQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=187132 BA890_RS12980 WP_014233117.1 2834560..2835099(-) (ssb) [Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 strain ATCC 14048]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAACCTAGGTAACGACCCTGAAATTCGTTACATGCCGAATGG
CGGTGCAGTAGCAAACATTACTATTGCAACCTCTGATTCATGGCGTGATAAAGCGACTGGCGAACAGCGCGAAAAAACTG
AGTGGCACCGAGTTGTGCTGTTTGGCAAACTTGCGGAAGTTGCTGGCGAATACCTACGTAAAGGCTCACAAGTTTACGTT
GAAGGACAACTTCAAACGCGTAAATGGCAAGATCAGAGTGGTCAAGACCGTTACTCAACTGAAGTTGTGGTTCAGGGCTT
CAATGGCGTAATGCAAATGCTGGGTGGTCGCGCTCAAGGTGGCGCTCCTGCTATGGGTGGCCAGGCACCTCAGCAAGGTG
GTTGGGGTCAGCCTCAGCAACCAGCTCAGCCGCAATACAATGCGCCTCAGCAACAAGCTCCAAAGCAATCGGCTCCACAA
CAGCCTCAGCAGCAGTACAATGAGCCACCAATGGATTTTGACGACGATATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

80.328

100

0.821
  ssb Glaesserella parasuis strain SC1401

56.614

100

0.598
  ssb Neisseria meningitidis MC58

46.667

100

0.469
  ssb Neisseria gonorrhoeae MS11

46.667

100

0.469

Multiple sequence alignment