Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   BA890_RS04835 Genome accession   NZ_CP016345
Coordinates   1047835..1050093 (+) Length   752 a.a.
NCBI ID   WP_024372711.1    Uniprot ID   A0AAN1CW10
Organism   Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 strain ATCC 14048     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1042835..1055093
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BA890_RS04810 (BA890_04810) - 1043188..1043757 (-) 570 WP_014231282.1 PilZ domain-containing protein -
  BA890_RS04815 (BA890_04815) lolC 1044009..1045217 (+) 1209 WP_029791328.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  BA890_RS04820 (BA890_04820) lolD 1045210..1045917 (+) 708 WP_020332845.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  BA890_RS04825 (BA890_04825) lolE 1045920..1047164 (+) 1245 WP_024372710.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  BA890_RS04830 (BA890_04830) - 1047317..1047826 (-) 510 WP_014231286.1 DUF2062 domain-containing protein -
  BA890_RS04835 (BA890_04835) comEC 1047835..1050093 (+) 2259 WP_024372711.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  BA890_RS04840 (BA890_04840) msbA 1050125..1051873 (+) 1749 WP_014231288.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  BA890_RS04845 (BA890_04845) lpxK 1051877..1052884 (+) 1008 WP_020332849.1 tetraacyldisaccharide 4'-kinase -
  BA890_RS04850 (BA890_04850) - 1052865..1053044 (+) 180 WP_014231290.1 Trm112 family protein -
  BA890_RS04855 (BA890_04855) kdsB 1053044..1053802 (+) 759 WP_014231291.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 752 a.a.        Molecular weight: 84402.32 Da        Isoelectric Point: 8.1874

>NTDB_id=187110 BA890_RS04835 WP_024372711.1 1047835..1050093(+) (comEC) [Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 strain ATCC 14048]
MTLSEKSCTLALFVASIVSSAWWPIMPDWRWLLLGIITTGSIIKLRRGLISIGVILGLMVVIIHGNVLEYQRQALFNVGE
NSTITGKVDSSFNQISHGYEGLVTIKQVDDQSLLPFLKPKVRFITTFPIPVNSEFTTTAQVKPIIGLRNEAGFDAEKQAM
GSGILARMIVTGDAHWIIRNGSSVRQSIINLVMDDISHLDHFPLISALVFADRSWLSGDDWQGLRDSGLLHLASISGLHI
GMAFSFGFLLGVSVRSVIPRYQVVPSITGLTVALCYAWLADFSLPTTRAVSVCVIYIVLKYFLVHWSTWRVLLLAVAFQL
LIQPFASFSMSFWLSYLSVGMVLLVINFVRFNNSSWRGKLRTLFVTQLALSVFVIPISGYFFSGFSLSSIAYNLVFIPWF
GFVVVPLMFIALSTSLLLPAFSPIVWQLMDFSLWPLSESLQYAFGTWQPLSIELTWILFSLCTFLVLKRLLLWQGWLLLC
VITIIVSGLNGRKSTSWRIDVLDVGHGLAILVEKEGKALIYDTGKSWPEGSVAEQVIIPVLHRRGFREVDTLVLSHSDND
HAGGRQVIETHLKPSHKRSSQDFSGYQPCVSGDNWTWQQLDIEVLWPPQMVTRAYNPHSCVFRLRDRESDFSMLFTGDIE
SISEWILLREPEKLSSDVMLVPHHGSKSSSNPLFIHAVSPTLAVASLAKNNQWGMPADKVVTSYLNAGALWLDTGEGGQV
TIRVTKDKWDFVTKRSDTFEPWYRQMLRKGLE

Nucleotide


Download         Length: 2259 bp        

>NTDB_id=187110 BA890_RS04835 WP_024372711.1 1047835..1050093(+) (comEC) [Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 strain ATCC 14048]
ATGACTCTCTCAGAAAAAAGTTGCACCTTGGCGTTATTTGTCGCAAGCATTGTCTCATCGGCATGGTGGCCGATAATGCC
AGATTGGCGCTGGCTGCTGCTGGGAATAATTACCACTGGTTCAATAATTAAATTACGTCGTGGCTTAATTAGCATAGGCG
TAATTTTGGGCTTAATGGTAGTCATCATCCACGGCAATGTATTGGAGTATCAGCGACAAGCCCTTTTTAATGTAGGGGAG
AATAGTACCATAACTGGCAAAGTTGACAGCTCTTTTAATCAAATAAGTCATGGATATGAAGGACTCGTGACGATAAAACA
AGTGGATGATCAAAGTCTGTTACCTTTTCTTAAACCTAAAGTCCGTTTTATCACCACCTTTCCTATCCCTGTTAACAGTG
AATTTACGACCACGGCTCAGGTAAAGCCCATTATTGGGTTACGTAACGAAGCGGGCTTCGACGCTGAAAAGCAGGCAATG
GGAAGTGGTATTTTAGCCAGAATGATTGTGACTGGCGATGCGCACTGGATTATTCGTAACGGAAGTTCTGTACGTCAGTC
GATAATCAACCTGGTAATGGATGATATTTCCCATCTAGACCACTTTCCGTTAATCAGTGCTCTGGTATTTGCTGATAGAA
GCTGGCTTTCTGGTGATGACTGGCAAGGGCTGAGAGACAGTGGATTATTGCACCTGGCCTCTATCTCCGGGCTGCACATT
GGAATGGCTTTTAGCTTTGGTTTTTTGCTCGGTGTCAGTGTTCGCTCCGTTATCCCGCGTTATCAAGTGGTGCCTTCAAT
CACGGGGTTAACCGTCGCGCTGTGTTATGCCTGGCTCGCTGATTTTTCTCTGCCAACCACTCGCGCCGTATCGGTTTGTG
TCATCTACATTGTTCTAAAATACTTTTTGGTTCACTGGAGTACCTGGCGAGTGTTGCTCCTGGCGGTTGCTTTTCAGTTA
CTTATTCAGCCTTTCGCATCATTTAGTATGAGTTTCTGGTTGTCTTATCTCTCTGTGGGTATGGTGCTGTTGGTCATTAA
CTTTGTGCGGTTCAATAACAGTAGCTGGCGAGGAAAACTGCGAACCTTGTTTGTGACTCAACTTGCCTTGAGTGTATTTG
TCATACCTATCAGTGGCTATTTTTTCTCTGGCTTCAGCTTATCGTCCATCGCTTATAACCTTGTGTTTATTCCATGGTTT
GGGTTTGTCGTCGTTCCTTTAATGTTTATCGCGTTATCTACTTCTTTATTACTACCCGCATTCTCGCCAATAGTTTGGCA
ATTGATGGATTTCTCTTTATGGCCGTTAAGTGAATCTCTTCAGTATGCCTTTGGTACGTGGCAACCATTGTCGATAGAAC
TTACGTGGATACTGTTTTCTCTCTGTACTTTCTTGGTTTTGAAGCGGTTATTGCTTTGGCAGGGTTGGTTATTGCTGTGC
GTTATTACCATCATCGTTTCAGGTCTAAATGGACGAAAAAGTACCAGTTGGCGAATCGATGTTCTCGATGTCGGTCATGG
TCTTGCCATTCTGGTAGAAAAAGAGGGTAAAGCTCTGATTTACGATACTGGAAAATCCTGGCCTGAGGGCAGTGTTGCGG
AGCAGGTGATTATACCCGTGTTACATCGCAGAGGATTTAGAGAGGTTGATACCTTGGTTCTCAGTCACTCGGACAATGAC
CACGCAGGAGGGAGGCAAGTGATTGAAACGCACCTCAAGCCGAGCCATAAACGCAGCAGCCAAGATTTTAGTGGGTATCA
ACCTTGTGTGAGCGGTGATAATTGGACGTGGCAGCAACTCGATATCGAAGTGCTCTGGCCACCCCAAATGGTCACTCGAG
CCTACAACCCTCACTCGTGTGTCTTTAGACTCAGAGATCGAGAATCTGATTTTTCCATGCTGTTCACGGGCGATATTGAG
TCGATTAGTGAGTGGATACTTCTTCGTGAGCCTGAAAAATTATCTAGTGATGTGATGCTCGTTCCTCATCACGGTAGCAA
AAGTTCCTCCAATCCTCTTTTTATCCATGCAGTCTCTCCAACATTAGCGGTAGCATCACTGGCGAAAAATAATCAGTGGG
GAATGCCTGCTGACAAGGTAGTGACCTCGTATCTCAACGCAGGGGCGCTATGGCTTGATACTGGTGAGGGTGGACAAGTT
ACTATCCGAGTAACGAAAGATAAGTGGGATTTTGTAACCAAACGCAGTGATACATTTGAGCCTTGGTATAGGCAGATGCT
GCGTAAGGGGTTAGAATGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(504-681)

Competence protein (Competence)

(208-474)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio parahaemolyticus RIMD 2210633

66.755

100

0.668
  comEC Vibrio campbellii strain DS40M4

63.697

100

0.637
  comEC Vibrio cholerae strain A1552

38.757

100

0.39

Multiple sequence alignment