Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilW   Type   Machinery gene
Locus tag   A0O31_RS06020 Genome accession   NZ_CP016312
Coordinates   1150083..1151027 (-) Length   314 a.a.
NCBI ID   WP_071677087.1    Uniprot ID   A0A1J0LVA6
Organism   Thermus brockianus strain GE-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1145083..1156027
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A0O31_RS06005 (A0O31_01235) - 1146019..1146573 (-) 555 WP_071677084.1 shikimate kinase -
  A0O31_RS06010 (A0O31_01236) aroC 1146590..1147741 (-) 1152 WP_071677085.1 chorismate synthase -
  A0O31_RS06015 (A0O31_01237) pilQ 1147795..1150071 (-) 2277 WP_071677086.1 secretin N-terminal domain-containing protein Machinery gene
  A0O31_RS06020 (A0O31_01238) pilW 1150083..1151027 (-) 945 WP_071677087.1 competence protein Machinery gene
  A0O31_RS06025 (A0O31_01239) pilO 1151024..1151623 (-) 600 WP_071677935.1 type 4a pilus biogenesis protein PilO Machinery gene
  A0O31_RS06030 (A0O31_01240) pilN 1151613..1152236 (-) 624 WP_071677088.1 flagellar protein FliT Machinery gene
  A0O31_RS06035 (A0O31_01241) pilM 1152229..1153362 (-) 1134 WP_071677089.1 type IV pilus assembly protein PilM Machinery gene
  A0O31_RS06040 (A0O31_01242) - 1153555..1154559 (-) 1005 WP_071677090.1 homoisocitrate dehydrogenase -
  A0O31_RS06045 (A0O31_01243) - 1154629..1155138 (-) 510 WP_071677091.1 DUF5317 domain-containing protein -

Sequence

Protein


Download         Length: 314 a.a.        Molecular weight: 31913.89 Da        Isoelectric Point: 4.6879

>NTDB_id=186788 A0O31_RS06020 WP_071677087.1 1150083..1151027(-) (pilW) [Thermus brockianus strain GE-1]
MKETLARLAQAWQNLPQSTKLLLAGLLLVLAISLWYVGFYLPAQAPVAAETPQAPAEETPKALEAPPIPPLAESAPSQPS
PPTPSPAPTAPQASIKAETTPLPLPQAKQEAPPPNPFVPLVVEVPATAAPPLSSPTPTPAIRPQPVPTGAPVRVSQGTPL
PTPQVATAPRPLPGTSGALPAPKVLTPTPKAQVAQAPVEASVAPAPPTALVEAPLSQASQEAPPTPGQAPEGPAKTPLEA
LVEEKGLKLSGTLLGPVSVAILESKEGYLVLPVGSPIPGTEAVVRRIEGERITLALKEETLELAVSQAQAGGGQ

Nucleotide


Download         Length: 945 bp        

>NTDB_id=186788 A0O31_RS06020 WP_071677087.1 1150083..1151027(-) (pilW) [Thermus brockianus strain GE-1]
GTGAAGGAAACCCTCGCGCGCCTCGCCCAGGCGTGGCAAAACCTGCCCCAGTCCACCAAACTTCTCTTGGCGGGTTTGCT
CCTGGTGCTGGCCATCAGCTTGTGGTACGTGGGCTTCTACCTGCCCGCCCAGGCGCCGGTGGCGGCGGAAACGCCCCAAG
CCCCCGCTGAGGAAACGCCGAAGGCCCTCGAGGCCCCTCCCATCCCTCCTTTGGCCGAATCCGCCCCCAGCCAACCCTCC
CCGCCCACCCCTTCCCCAGCGCCCACCGCCCCCCAAGCCTCCATCAAAGCCGAGACCACCCCTCTCCCCCTGCCCCAAGC
CAAACAGGAAGCCCCACCCCCTAACCCCTTCGTACCCCTGGTGGTGGAGGTTCCGGCCACGGCGGCCCCGCCCCTCTCCT
CGCCCACCCCCACCCCAGCCATCCGGCCCCAGCCGGTGCCCACGGGCGCCCCGGTGCGCGTGAGCCAGGGCACCCCTTTG
CCCACGCCCCAGGTGGCCACCGCCCCAAGGCCCCTGCCCGGGACCTCCGGGGCCCTTCCCGCCCCCAAGGTGCTCACCCC
CACCCCCAAGGCCCAGGTAGCCCAAGCCCCGGTGGAGGCCAGCGTGGCCCCGGCCCCACCCACCGCCCTCGTGGAAGCGC
CTTTATCCCAAGCTTCCCAGGAGGCTCCGCCCACGCCGGGCCAAGCCCCGGAGGGCCCCGCCAAGACCCCCCTCGAGGCC
CTGGTGGAGGAAAAGGGGCTTAAGCTATCCGGTACCCTTTTGGGCCCGGTAAGCGTGGCCATCCTGGAGAGCAAGGAGGG
CTACCTGGTCCTGCCTGTGGGTAGCCCCATCCCCGGGACCGAGGCGGTGGTGCGCCGTATAGAAGGCGAGCGCATCACCT
TAGCCCTGAAAGAGGAAACGTTAGAACTGGCAGTTTCGCAAGCGCAAGCGGGAGGTGGTCAGTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilW Thermus thermophilus HB27

54.517

100

0.557

Multiple sequence alignment