Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   A6J87_RS08075 Genome accession   NZ_CP020451
Coordinates   1571277..1571963 (+) Length   228 a.a.
NCBI ID   WP_064524133.1    Uniprot ID   -
Organism   Streptococcus salivarius strain FDAARGOS_259     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1566277..1576963
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J87_RS08060 (A6J87_08030) - 1566853..1567779 (+) 927 WP_014634836.1 glycosyltransferase -
  A6J87_RS08065 (A6J87_08035) - 1567860..1569218 (+) 1359 WP_141751003.1 DUF2142 domain-containing protein -
  A6J87_RS08070 (A6J87_08040) - 1569236..1571230 (+) 1995 WP_064524135.1 hypothetical protein -
  A6J87_RS08075 (A6J87_08045) radC 1571277..1571963 (+) 687 WP_064524133.1 DNA repair protein RadC Machinery gene
  A6J87_RS08080 (A6J87_08050) - 1572021..1572716 (-) 696 WP_064524131.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  A6J87_RS08085 (A6J87_08055) - 1572709..1573368 (-) 660 WP_080611876.1 redox-sensing transcriptional repressor Rex -
  A6J87_RS08090 (A6J87_08060) - 1573510..1573857 (-) 348 WP_002884733.1 DUF1831 domain-containing protein -
  A6J87_RS08095 (A6J87_08065) - 1573859..1574971 (-) 1113 WP_080611877.1 cysteine desulfurase family protein -
  A6J87_RS08100 (A6J87_08070) - 1574975..1575946 (-) 972 WP_002884482.1 ribose-phosphate diphosphokinase -
  A6J87_RS08105 (A6J87_08075) - 1576220..1576795 (-) 576 WP_002886838.1 CYTH domain-containing protein -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25777.82 Da        Isoelectric Point: 6.7539

>NTDB_id=186786 A6J87_RS08075 WP_064524133.1 1571277..1571963(+) (radC) [Streptococcus salivarius strain FDAARGOS_259]
MYSIVAEESGLLPRERLLQKGAEVLSDQELLAIVLRTGTKSESVLSMANRILKGMTSLADLSRLSLNELQEIPGIGRVKS
IELKAMVELAKRIEKAELSRSEQIMSSQQVARRMMLDIGDKPQEHLVAIYLDTQNRIIQQKTVFIGGVRRSIAEPREILH
YACHLMATSLIVVHNHPSGEAYPSRNDIDFTQKIKRACDDLGICLLDHLIVGKSTYYSFREEREDFDL

Nucleotide


Download         Length: 687 bp        

>NTDB_id=186786 A6J87_RS08075 WP_064524133.1 1571277..1571963(+) (radC) [Streptococcus salivarius strain FDAARGOS_259]
ATGTATAGTATTGTAGCTGAGGAGTCGGGGCTTTTGCCTCGTGAGCGTCTCTTGCAGAAAGGAGCAGAAGTGTTGTCTGA
CCAAGAGCTGTTGGCGATAGTGCTGCGGACGGGGACCAAGTCTGAGTCGGTCTTATCTATGGCTAATCGTATTTTGAAAG
GGATGACGAGTTTGGCGGATTTGTCTCGTTTGTCCTTGAATGAGCTTCAGGAGATTCCTGGTATTGGACGTGTGAAGTCT
ATTGAGCTCAAGGCTATGGTGGAGTTGGCTAAGCGGATTGAGAAGGCTGAGTTGTCTCGTTCTGAGCAGATTATGTCCAG
TCAGCAGGTGGCTCGTCGTATGATGTTGGATATTGGGGACAAGCCTCAGGAGCATCTGGTGGCTATCTATTTGGATACGC
AGAACCGTATTATTCAGCAAAAGACGGTCTTTATTGGTGGGGTCCGTCGTTCGATTGCTGAGCCACGTGAGATTTTACAT
TATGCCTGTCATCTGATGGCAACGTCTTTGATTGTGGTTCACAATCATCCGTCAGGTGAGGCCTATCCAAGTCGAAATGA
TATCGATTTTACTCAAAAGATTAAGCGGGCCTGTGATGACTTAGGGATTTGTCTGCTTGATCATCTGATTGTTGGAAAAT
CAACCTATTATTCCTTTCGTGAGGAGAGGGAGGATTTTGATCTTTAG

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(105-222)

UPF0758 N-terminal (UPF0758_N)

(13-80)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Streptococcus pneumoniae TIGR4

59.375

98.246

0.583
  radC Streptococcus pneumoniae R6

58.929

98.246

0.579
  radC Streptococcus pneumoniae D39

58.929

98.246

0.579
  radC Streptococcus gordonii str. Challis substr. CH1

58.559

97.368

0.57
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

47.143

92.105

0.434

Multiple sequence alignment