Detailed information
Bioinformatically predicted
Overview
| Name | ruvB | Type | Machinery gene |
| Locus tag | A6J87_RS05210 | Genome accession | NZ_CP020451 |
| Coordinates | 1031765..1032766 (+) | Length | 333 a.a. |
| NCBI ID | WP_060973085.1 | Uniprot ID | - |
| Organism | Streptococcus salivarius strain FDAARGOS_259 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 1026765..1037766
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A6J87_RS05190 (A6J87_05180) | - | 1027455..1028747 (+) | 1293 | WP_080611658.1 | adenylosuccinate synthase | - |
| A6J87_RS05195 (A6J87_05185) | - | 1029023..1029457 (+) | 435 | WP_049545228.1 | low molecular weight protein-tyrosine-phosphatase | - |
| A6J87_RS05200 (A6J87_05190) | - | 1029454..1029864 (+) | 411 | WP_014635145.1 | membrane protein | - |
| A6J87_RS05205 (A6J87_05195) | - | 1029861..1031684 (+) | 1824 | WP_060973086.1 | acyltransferase family protein | - |
| A6J87_RS05210 (A6J87_05200) | ruvB | 1031765..1032766 (+) | 1002 | WP_060973085.1 | Holliday junction branch migration DNA helicase RuvB | Machinery gene |
| A6J87_RS05215 (A6J87_05205) | rpsJ | 1033010..1033318 (+) | 309 | WP_002885653.1 | 30S ribosomal protein S10 | - |
| A6J87_RS05220 (A6J87_05210) | rplC | 1033433..1034059 (+) | 627 | WP_002885755.1 | 50S ribosomal protein L3 | - |
| A6J87_RS05225 (A6J87_05215) | rplD | 1034084..1034707 (+) | 624 | WP_002885795.1 | 50S ribosomal protein L4 | - |
| A6J87_RS05230 (A6J87_05220) | - | 1034707..1035003 (+) | 297 | WP_002887066.1 | 50S ribosomal protein L23 | - |
| A6J87_RS05235 (A6J87_05225) | rplB | 1035021..1035854 (+) | 834 | WP_002887065.1 | 50S ribosomal protein L2 | - |
| A6J87_RS05240 (A6J87_05230) | rpsS | 1035948..1036226 (+) | 279 | WP_000533765.1 | 30S ribosomal protein S19 | - |
| A6J87_RS05245 (A6J87_05235) | rplV | 1036242..1036586 (+) | 345 | WP_002887063.1 | 50S ribosomal protein L22 | - |
| A6J87_RS05250 (A6J87_05240) | rpsC | 1036599..1037252 (+) | 654 | WP_002885727.1 | 30S ribosomal protein S3 | - |
| A6J87_RS05255 (A6J87_05245) | rplP | 1037256..1037669 (+) | 414 | WP_000960950.1 | 50S ribosomal protein L16 | - |
Sequence
Protein
Download Length: 333 a.a. Molecular weight: 37565.10 Da Isoelectric Point: 4.5460
>NTDB_id=186751 A6J87_RS05210 WP_060973085.1 1031765..1032766(+) (ruvB) [Streptococcus salivarius strain FDAARGOS_259]
MARILDNDLLGDEEYVERTLRPQYFKEYIGQDKVKDQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMAFVIANEMGVNL
KQTSGPAIEKAGDLVAILNDLEPGDILFIDEIHRIPMAVEEVLYSAMEDYYIDIMIGAGETSRSVHLELPPFTLVGATTR
AGMLSNPLRARFGINGHMEYYELPDLKEIIERTSEIFDMTITPEAALELARRSRGTPRIANRLLKRVRDYAQIMGDGIID
DKIADKALTMLDVDHEGLDYVDQKILRTMIEMYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIMRTRTGRVATVK
AYEHMGYDYTKES
MARILDNDLLGDEEYVERTLRPQYFKEYIGQDKVKDQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMAFVIANEMGVNL
KQTSGPAIEKAGDLVAILNDLEPGDILFIDEIHRIPMAVEEVLYSAMEDYYIDIMIGAGETSRSVHLELPPFTLVGATTR
AGMLSNPLRARFGINGHMEYYELPDLKEIIERTSEIFDMTITPEAALELARRSRGTPRIANRLLKRVRDYAQIMGDGIID
DKIADKALTMLDVDHEGLDYVDQKILRTMIEMYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIMRTRTGRVATVK
AYEHMGYDYTKES
Nucleotide
Download Length: 1002 bp
>NTDB_id=186751 A6J87_RS05210 WP_060973085.1 1031765..1032766(+) (ruvB) [Streptococcus salivarius strain FDAARGOS_259]
ATGGCAAGAATATTAGATAATGATTTACTAGGAGATGAAGAGTATGTTGAGCGTACCCTTCGTCCTCAGTACTTTAAGGA
ATATATTGGTCAAGATAAGGTTAAGGACCAATTAAAGATTTTTATAGAGGCAGCTAAACTTCGTGATGAAGCATTGGATC
ATACTCTTTTGTTTGGTCCTCCAGGTTTAGGGAAAACGACCATGGCTTTTGTGATAGCTAATGAGATGGGCGTCAATTTA
AAGCAGACGTCTGGTCCAGCAATTGAGAAGGCTGGAGATTTGGTTGCCATACTCAATGACTTGGAGCCAGGTGATATCTT
ATTTATTGATGAGATTCATCGAATACCTATGGCAGTGGAAGAAGTACTTTATAGTGCTATGGAAGATTACTACATCGATA
TCATGATTGGTGCAGGTGAAACAAGTCGTAGTGTTCACCTAGAGTTACCACCGTTCACTTTAGTGGGTGCAACCACACGA
GCAGGTATGTTGTCAAATCCATTGAGGGCTCGTTTTGGGATTAATGGTCATATGGAATATTATGAGTTACCAGATTTGAA
GGAAATTATAGAACGCACTTCAGAAATCTTTGATATGACTATAACACCTGAGGCTGCCCTAGAGTTAGCACGTCGTAGTC
GTGGAACGCCACGTATTGCTAACCGCCTACTTAAGCGTGTGAGAGACTATGCACAAATTATGGGTGATGGCATCATTGAT
GATAAGATTGCAGACAAGGCGTTGACTATGTTGGATGTGGACCATGAAGGACTAGATTATGTCGACCAAAAAATTCTCCG
AACCATGATTGAGATGTATGGTGGGGGACCGGTTGGTCTAGGGACCTTGTCAGTTAATATTGCTGAAGAGCGAGAAACGG
TAGAAGATATGTATGAACCCTATCTAATTCAAAAAGGATTTATTATGCGAACACGAACAGGACGTGTTGCAACGGTTAAA
GCCTATGAACACATGGGGTACGACTACACTAAAGAAAGTTGA
ATGGCAAGAATATTAGATAATGATTTACTAGGAGATGAAGAGTATGTTGAGCGTACCCTTCGTCCTCAGTACTTTAAGGA
ATATATTGGTCAAGATAAGGTTAAGGACCAATTAAAGATTTTTATAGAGGCAGCTAAACTTCGTGATGAAGCATTGGATC
ATACTCTTTTGTTTGGTCCTCCAGGTTTAGGGAAAACGACCATGGCTTTTGTGATAGCTAATGAGATGGGCGTCAATTTA
AAGCAGACGTCTGGTCCAGCAATTGAGAAGGCTGGAGATTTGGTTGCCATACTCAATGACTTGGAGCCAGGTGATATCTT
ATTTATTGATGAGATTCATCGAATACCTATGGCAGTGGAAGAAGTACTTTATAGTGCTATGGAAGATTACTACATCGATA
TCATGATTGGTGCAGGTGAAACAAGTCGTAGTGTTCACCTAGAGTTACCACCGTTCACTTTAGTGGGTGCAACCACACGA
GCAGGTATGTTGTCAAATCCATTGAGGGCTCGTTTTGGGATTAATGGTCATATGGAATATTATGAGTTACCAGATTTGAA
GGAAATTATAGAACGCACTTCAGAAATCTTTGATATGACTATAACACCTGAGGCTGCCCTAGAGTTAGCACGTCGTAGTC
GTGGAACGCCACGTATTGCTAACCGCCTACTTAAGCGTGTGAGAGACTATGCACAAATTATGGGTGATGGCATCATTGAT
GATAAGATTGCAGACAAGGCGTTGACTATGTTGGATGTGGACCATGAAGGACTAGATTATGTCGACCAAAAAATTCTCCG
AACCATGATTGAGATGTATGGTGGGGGACCGGTTGGTCTAGGGACCTTGTCAGTTAATATTGCTGAAGAGCGAGAAACGG
TAGAAGATATGTATGAACCCTATCTAATTCAAAAAGGATTTATTATGCGAACACGAACAGGACGTGTTGCAACGGTTAAA
GCCTATGAACACATGGGGTACGACTACACTAAAGAAAGTTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ruvB | Streptococcus pneumoniae TIGR4 |
86.747 |
99.7 |
0.865 |
| ruvB | Streptococcus pneumoniae R6 |
86.446 |
99.7 |
0.862 |
| ruvB | Streptococcus pneumoniae D39 |
86.446 |
99.7 |
0.862 |
| ruvB | Bacillus subtilis subsp. subtilis str. 168 |
58.204 |
96.997 |
0.565 |
| ruvB | Synechocystis sp. PCC 6803 |
51.118 |
93.994 |
0.48 |
| ruvB | Helicobacter pylori 26695 |
49.844 |
96.396 |
0.48 |