Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   A6J87_RS00895 Genome accession   NZ_CP020451
Coordinates   197229..197885 (+) Length   218 a.a.
NCBI ID   WP_073950583.1    Uniprot ID   -
Organism   Streptococcus salivarius strain FDAARGOS_259     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 192229..202885
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J87_RS00865 (A6J87_00860) - 192513..192782 (-) 270 WP_002890660.1 DUF3165 family protein -
  A6J87_RS00870 (A6J87_00865) typA 192802..194652 (-) 1851 WP_002884130.1 translational GTPase TypA -
  A6J87_RS00875 (A6J87_00870) - 194797..195765 (-) 969 WP_013990790.1 ROK family glucokinase -
  A6J87_RS00880 (A6J87_00875) - 195758..195964 (-) 207 WP_014634249.1 YqgQ family protein -
  A6J87_RS00885 (A6J87_00880) - 196072..196509 (-) 438 WP_064524717.1 Fur family transcriptional regulator -
  A6J87_RS00890 (A6J87_00885) - 196598..197119 (-) 522 WP_073950580.1 Dps family protein -
  A6J87_RS00895 (A6J87_00890) cclA/cilC 197229..197885 (+) 657 WP_073950583.1 A24 family peptidase Machinery gene
  A6J87_RS00900 (A6J87_00895) - 197915..199318 (-) 1404 Protein_179 serine hydrolase -
  A6J87_RS00905 (A6J87_00900) sodA 199421..200026 (-) 606 WP_080611425.1 superoxide dismutase SodA -
  A6J87_RS00910 (A6J87_00905) holA 200122..201156 (-) 1035 WP_080611426.1 DNA polymerase III subunit delta -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 25145.33 Da        Isoelectric Point: 7.7014

>NTDB_id=186703 A6J87_RS00895 WP_073950583.1 197229..197885(+) (cclA/cilC) [Streptococcus salivarius strain FDAARGOS_259]
MLNIIYFFLGASLGSFIGLVCDRFPENSIIFPSSHCSYCKHQLRFSEMIPILSQLFLRSRCRSCQSPIPFCYLFMEIFCG
VICLLYFYDFLSLEVTYFLYFSLCLSIFDLKQKSYPLLIWIVGTVPLLFMGNYYLTFAIGIILAFLSFIKHLNIGEGDFL
YLASASLIFPFSKILLTIELACLLGLAYFLIRRNLKECIAFVPFLFLGIVLLTFYSIV

Nucleotide


Download         Length: 657 bp        

>NTDB_id=186703 A6J87_RS00895 WP_073950583.1 197229..197885(+) (cclA/cilC) [Streptococcus salivarius strain FDAARGOS_259]
ATGTTAAACATTATTTATTTTTTTCTAGGAGCCTCTTTAGGCTCATTTATCGGACTAGTTTGTGATCGTTTTCCTGAGAA
CTCGATTATTTTTCCTAGTAGTCACTGTAGCTATTGCAAGCATCAGTTGCGTTTTTCCGAGATGATTCCTATCCTCTCAC
AACTTTTCTTAAGATCTCGATGTCGTTCATGTCAGTCTCCTATCCCTTTTTGTTACCTCTTTATGGAAATATTTTGTGGG
GTAATATGTCTTCTATATTTCTATGACTTTTTAAGTCTTGAAGTAACCTACTTTCTTTACTTCAGCCTTTGTTTATCTAT
TTTTGATTTGAAACAGAAATCCTATCCACTTCTGATTTGGATAGTTGGAACAGTCCCACTCCTATTCATGGGCAACTATT
ACCTCACATTTGCCATAGGGATAATCCTCGCTTTCCTTTCTTTTATAAAACATCTAAACATTGGGGAAGGTGATTTTCTC
TACTTAGCAAGTGCCTCACTTATTTTCCCATTTTCAAAAATACTTCTAACTATCGAGCTTGCGTGCCTATTAGGGCTAGC
GTACTTCCTTATACGAAGAAATCTTAAGGAATGTATCGCATTTGTCCCATTTCTTTTTCTAGGGATTGTACTTCTTACCT
TTTATTCAATTGTATAG

Domains

Predicted by InterProScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(9-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

39.72

98.165

0.39
  cclA/cilC Streptococcus pneumoniae TIGR4

39.72

98.165

0.39
  cclA/cilC Streptococcus mitis NCTC 12261

39.252

98.165

0.385
  cclA/cilC Streptococcus pneumoniae Rx1

38.785

98.165

0.381
  cclA/cilC Streptococcus pneumoniae D39

38.785

98.165

0.381
  cclA/cilC Streptococcus pneumoniae R6

38.785

98.165

0.381