Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   A6J85_RS08485 Genome accession   NZ_CP020450
Coordinates   1700988..1701668 (+) Length   226 a.a.
NCBI ID   WP_045503208.1    Uniprot ID   -
Organism   Streptococcus gordonii strain FDAARGOS_257     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1695988..1706668
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J85_RS08465 (A6J85_08375) - 1696048..1696465 (+) 418 Protein_1592 NUDIX hydrolase -
  A6J85_RS08470 (A6J85_08380) - 1696509..1697495 (-) 987 WP_008809179.1 L-lactate dehydrogenase -
  A6J85_RS08475 (A6J85_08385) gyrA 1697692..1700145 (+) 2454 WP_012000631.1 DNA gyrase subunit A -
  A6J85_RS08480 (A6J85_08390) - 1700149..1700904 (+) 756 WP_060970992.1 class A sortase -
  A6J85_RS08485 (A6J85_08395) radC 1700988..1701668 (+) 681 WP_045503208.1 DNA repair protein RadC Machinery gene
  A6J85_RS08490 (A6J85_08400) - 1701688..1702335 (-) 648 WP_012000628.1 redox-sensing transcriptional repressor Rex -
  A6J85_RS08495 (A6J85_08405) - 1702438..1702671 (-) 234 WP_060553542.1 DUF4649 family protein -
  A6J85_RS08500 (A6J85_08410) - 1702706..1703053 (-) 348 WP_045503199.1 DUF1831 domain-containing protein -
  A6J85_RS08505 (A6J85_08415) - 1703043..1704170 (-) 1128 WP_082307616.1 cysteine desulfurase family protein -
  A6J85_RS08510 (A6J85_08420) - 1704180..1705136 (-) 957 WP_105165167.1 ribose-phosphate diphosphokinase -
  A6J85_RS08515 (A6J85_08425) - 1705208..1705777 (-) 570 WP_012000624.1 CYTH domain-containing protein -
  A6J85_RS08520 (A6J85_08430) - 1705876..1706541 (+) 666 WP_012000623.1 GTP pyrophosphokinase family protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 25599.40 Da        Isoelectric Point: 6.7740

>NTDB_id=186676 A6J85_RS08485 WP_045503208.1 1700988..1701668(+) (radC) [Streptococcus gordonii strain FDAARGOS_257]
MYSISFQEESLLPRERLVRLGAEQLSNQELLSILIRTGNKKENVFQIASKILSSVSSLTELRHMTLSELQGISGIGQVKA
IELQAMIELGSRISKAENFEGERILSSQKLAKKMQQELSHKKQEHLVALYLNTQNQIIHQQTIFIGSLTRSLAEPREILH
YAIKHMATSIILVHNHPSGATRPSRDDDQVTEKIKEACEMMGFVLLDHLIVGGDSYYSYREETDLI

Nucleotide


Download         Length: 681 bp        

>NTDB_id=186676 A6J85_RS08485 WP_045503208.1 1700988..1701668(+) (radC) [Streptococcus gordonii strain FDAARGOS_257]
ATGTACAGTATATCATTTCAAGAGGAATCATTATTACCACGGGAACGATTAGTAAGACTAGGAGCAGAGCAGTTAAGCAA
TCAGGAATTGCTTTCCATTCTCATTCGTACAGGAAATAAAAAAGAAAATGTATTCCAAATAGCTAGTAAAATTTTATCAT
CCGTATCAAGTTTGACTGAACTCCGTCATATGACTCTGTCTGAACTACAGGGGATATCTGGTATTGGACAAGTAAAGGCT
ATTGAACTACAGGCCATGATTGAGTTGGGCAGTCGTATTTCAAAAGCGGAGAATTTTGAAGGAGAACGTATACTGAGTAG
TCAAAAACTTGCTAAGAAAATGCAACAGGAATTAAGTCATAAAAAACAAGAGCATTTGGTTGCACTTTATTTGAACACAC
AAAATCAGATTATTCATCAACAAACTATTTTCATTGGAAGTCTGACTCGGAGTTTAGCCGAACCTAGAGAGATTCTTCAT
TATGCGATTAAGCATATGGCGACATCAATTATCTTGGTCCATAATCATCCTTCAGGCGCAACTAGGCCAAGTAGGGACGA
CGATCAGGTGACAGAGAAAATAAAAGAAGCCTGCGAAATGATGGGCTTCGTTTTATTGGATCATTTAATTGTGGGAGGGG
ATAGCTATTATAGTTATCGAGAGGAAACAGACCTCATTTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(11-81)

RadC-like JAB domain (RadC)

(106-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Streptococcus gordonii str. Challis substr. CH1

99.558

100

0.996
  radC Streptococcus pneumoniae TIGR4

76.106

100

0.761
  radC Streptococcus pneumoniae R6

75.664

100

0.757
  radC Streptococcus pneumoniae D39

75.664

100

0.757
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

47.143

92.92

0.438

Multiple sequence alignment