Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   A6J85_RS03350 Genome accession   NZ_CP020450
Coordinates   675635..676633 (-) Length   332 a.a.
NCBI ID   WP_082307286.1    Uniprot ID   -
Organism   Streptococcus gordonii strain FDAARGOS_257     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 670635..681633
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J85_RS03330 (A6J85_03290) - 672162..673976 (-) 1815 WP_082307284.1 acyltransferase family protein -
  A6J85_RS03335 (A6J85_03295) - 673966..674379 (-) 414 WP_008808141.1 hypothetical protein -
  A6J85_RS03340 (A6J85_03300) - 674382..674804 (-) 423 WP_053794258.1 low molecular weight protein-tyrosine-phosphatase -
  A6J85_RS03345 (A6J85_03305) - 675052..675630 (-) 579 WP_082307285.1 nucleotidyltransferase family protein -
  A6J85_RS03350 (A6J85_03310) ruvB 675635..676633 (-) 999 WP_082307286.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  A6J85_RS03355 (A6J85_03315) - 676746..679301 (-) 2556 WP_185760777.1 Spy0128 family protein -

Sequence

Protein


Download         Length: 332 a.a.        Molecular weight: 37527.99 Da        Isoelectric Point: 4.4738

>NTDB_id=186605 A6J85_RS03350 WP_082307286.1 675635..676633(-) (ruvB) [Streptococcus gordonii strain FDAARGOS_257]
MSRILDNEQMMDEEMVERTLRPQYLQEYIGQDKVKNQLKIFIEAAKLRDEALDHALLFGPPGLGKTTMAFVIANELGVNI
KQTSGPVIEKAGDLVAILNDLEPGDVLFIDEIHRLPMAVEEVLYSAMEDFYIDIMIGSGDANRSVHLDLPPFTLIGATTR
AGMLSNPLRARFGITGHMEYYEEADLTEIVERTAEIFEMDITHEAAKELALRSRGTPRIANRLLKRVRDYAQVMGNGLID
ETITDQALSMLDVDHEGLDYVDQKILRTMIEMYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIMRTRTGRVATRK
AYEHLGYEYMEK

Nucleotide


Download         Length: 999 bp        

>NTDB_id=186605 A6J85_RS03350 WP_082307286.1 675635..676633(-) (ruvB) [Streptococcus gordonii strain FDAARGOS_257]
ATGAGTAGAATTTTAGATAATGAACAAATGATGGATGAAGAAATGGTGGAGCGCACGCTTCGACCACAATATCTGCAGGA
GTATATTGGCCAAGATAAGGTCAAGAATCAGTTGAAAATTTTTATTGAAGCAGCTAAACTAAGGGATGAGGCTTTGGATC
ATGCTCTTTTATTTGGCCCTCCTGGACTGGGGAAAACGACCATGGCTTTTGTGATTGCCAATGAGCTGGGTGTGAATATC
AAGCAGACTTCGGGACCAGTTATTGAAAAAGCAGGAGATTTGGTTGCTATTTTAAATGATTTAGAGCCTGGTGACGTTCT
TTTTATCGATGAAATACATCGTTTGCCAATGGCAGTAGAAGAAGTCCTCTACAGTGCTATGGAAGATTTTTACATCGATA
TCATGATTGGTTCAGGGGATGCTAATCGCAGTGTCCATCTTGATTTGCCACCATTTACACTTATCGGTGCAACAACGCGT
GCAGGAATGTTGTCCAATCCTCTGAGAGCTCGCTTTGGTATCACAGGGCACATGGAGTACTATGAAGAAGCTGATTTGAC
TGAGATTGTTGAGCGAACGGCAGAAATTTTTGAGATGGATATCACTCATGAAGCAGCTAAAGAACTGGCTTTGCGTAGTC
GTGGCACCCCCCGAATTGCTAACCGTCTATTAAAGCGCGTCCGGGATTATGCTCAGGTTATGGGCAATGGTTTGATTGAT
GAGACGATCACAGATCAAGCTCTTTCCATGTTAGATGTAGATCATGAAGGTCTGGACTATGTCGATCAAAAAATTCTGAG
AACGATGATTGAGATGTATGGTGGTGGTCCAGTCGGTCTAGGTACCTTGTCCGTAAATATTGCTGAGGAGCGTGAAACGG
TCGAAGATATGTATGAGCCTTATTTGATTCAAAAAGGCTTTATCATGAGGACGAGAACTGGTCGTGTTGCGACTAGAAAA
GCCTATGAACATTTAGGTTATGAATATATGGAGAAATAG

Domains

Predicted by InterProScan.

RuvB C-terminal winged helix domain (WHD_RuvB)

(256-325)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(20-178)

RuvB AAA lid domain (AAA_lid_4)

(181-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Streptococcus pneumoniae TIGR4

90.663

100

0.907
  ruvB Streptococcus pneumoniae R6

90.361

100

0.904
  ruvB Streptococcus pneumoniae D39

90.361

100

0.904
  ruvB Bacillus subtilis subsp. subtilis str. 168

59.202

98.193

0.581
  ruvB Helicobacter pylori 26695

52.632

97.289

0.512
  ruvB Synechocystis sp. PCC 6803

50.799

94.277

0.479

Multiple sequence alignment