Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   BAY15_RS15330 Genome accession   NZ_CP016294
Coordinates   3440464..3441522 (-) Length   352 a.a.
NCBI ID   WP_038686523.1    Uniprot ID   -
Organism   Stenotrophomonas rhizophila strain QL-P4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3435464..3446522
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAY15_RS15305 (BAY15_2994) - 3436022..3436237 (-) 216 WP_237334275.1 YkgJ family cysteine cluster protein -
  BAY15_RS15310 (BAY15_2995) - 3436418..3438400 (-) 1983 WP_068853869.1 type IV pilus secretin PilQ family protein -
  BAY15_RS15315 (BAY15_2996) - 3438421..3438918 (-) 498 WP_237334367.1 pilus assembly protein PilP -
  BAY15_RS15320 (BAY15_2997) - 3438954..3439628 (-) 675 WP_068853871.1 type 4a pilus biogenesis protein PilO -
  BAY15_RS15325 (BAY15_2998) - 3439625..3440464 (-) 840 WP_068853872.1 PilN domain-containing protein -
  BAY15_RS15330 (BAY15_2999) pilM 3440464..3441522 (-) 1059 WP_038686523.1 pilus assembly protein PilM Machinery gene
  BAY15_RS15335 (BAY15_3000) - 3441748..3444168 (+) 2421 WP_068853873.1 penicillin-binding protein 1A -
  BAY15_RS15340 (BAY15_3001) - 3444262..3444909 (+) 648 WP_068853874.1 hypothetical protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37704.24 Da        Isoelectric Point: 4.4460

>NTDB_id=186568 BAY15_RS15330 WP_038686523.1 3440464..3441522(-) (pilM) [Stenotrophomonas rhizophila strain QL-P4]
MGLIPKSQSPLIGVDISSTAVKLLQLSRSGNRFRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAVNRSGTKARHAAAA
VAGSAVITKLIPMPADLDENDMEAQVELEAVNYIPYPIEEVNLDFEVLGAIPNNPEMVQVLLAASRSENVELRQSALELG
GLTARVMDVEAFAVENAFALVASELPIASDGVVALVDIGATMTTLNVLRGGRSLYSREQVFGGKQLTDEVMRRYGLTYEE
AGLAKRQGGLPESYEMEVLEPFKEATVQQISRLLQFFYAGSEFNRVDHIVLAGGCAALAGLPEMVEEQLGVATVVANPLA
QMTLGPKVQAHALAQDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=186568 BAY15_RS15330 WP_038686523.1 3440464..3441522(-) (pilM) [Stenotrophomonas rhizophila strain QL-P4]
GTGGGGCTTATCCCAAAAAGCCAGTCGCCGCTTATTGGCGTCGACATCAGCTCGACTGCAGTAAAGCTCTTGCAGCTTTC
CCGCAGTGGCAATCGTTTCCGCGTGGAACATTACGCTGTGGAACCACTACCGCCGAATGCGGTGGTGGAAAAGAACATCG
TGGAAGTGGAGGCCGTGGGTGAGGCCATCCGCCGCGCGGTGAACCGTTCAGGCACCAAGGCCCGGCATGCCGCCGCAGCC
GTGGCCGGCTCTGCGGTCATCACCAAGCTCATCCCGATGCCCGCTGACCTGGACGAGAACGACATGGAAGCCCAGGTCGA
GCTCGAAGCGGTCAACTACATCCCGTACCCGATCGAGGAAGTGAACCTCGATTTCGAGGTGCTGGGTGCGATTCCCAACA
ACCCGGAAATGGTCCAGGTGCTGTTGGCGGCGTCGCGGTCGGAGAACGTGGAGCTGCGCCAATCGGCGCTGGAGCTCGGT
GGCCTGACCGCCCGGGTGATGGACGTGGAGGCCTTCGCGGTCGAAAACGCCTTCGCGCTGGTGGCCAGTGAACTGCCAAT
CGCCAGCGATGGCGTGGTCGCGCTGGTCGACATCGGTGCCACCATGACCACCCTGAACGTGCTTCGTGGCGGGCGCAGCC
TCTACAGCCGCGAACAGGTGTTCGGTGGCAAGCAGCTGACCGACGAGGTCATGCGCCGCTACGGCCTGACCTACGAGGAA
GCGGGCCTGGCCAAGCGCCAGGGTGGGTTGCCGGAAAGCTACGAGATGGAAGTGCTCGAGCCGTTCAAGGAAGCCACGGT
CCAGCAGATCAGCCGCCTGCTGCAGTTCTTCTATGCAGGCAGTGAGTTCAACCGGGTCGACCACATCGTGCTGGCCGGCG
GTTGCGCGGCGCTGGCCGGTCTGCCGGAGATGGTGGAGGAACAGCTGGGCGTGGCCACCGTGGTGGCCAATCCGCTGGCG
CAGATGACGCTGGGTCCGAAGGTGCAGGCGCATGCCCTGGCCCAGGACGCCCCGGCGCTGATGATTGCCACCGGTCTGGC
GCTGAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

50.852

100

0.509
  comM Acinetobacter nosocomialis M2

50.568

100

0.506
  comM Acinetobacter baylyi ADP1

50

100

0.5
  pilM Legionella pneumophila strain ERS1305867

47.009

99.716

0.469

Multiple sequence alignment