Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   BAY15_RS14895 Genome accession   NZ_CP016294
Coordinates   3345333..3346718 (+) Length   461 a.a.
NCBI ID   WP_068853796.1    Uniprot ID   A0AAP5AH03
Organism   Stenotrophomonas rhizophila strain QL-P4     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 3347303..3378064 3345333..3346718 flank 585


Gene organization within MGE regions


Location: 3345333..3378064
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAY15_RS14895 (BAY15_2918) pilR 3345333..3346718 (+) 1386 WP_068853796.1 sigma-54 dependent transcriptional regulator Regulator
  BAY15_RS14900 (BAY15_2919) - 3347303..3347851 (+) 549 WP_068853797.1 SymE family type I addiction module toxin -
  BAY15_RS14905 (BAY15_2920) - 3348043..3348744 (-) 702 WP_167693304.1 hypothetical protein -
  BAY15_RS18945 - 3349269..3349496 (-) 228 WP_083214200.1 hypothetical protein -
  BAY15_RS14910 (BAY15_2921) - 3349723..3350052 (-) 330 WP_157771754.1 hypothetical protein -
  BAY15_RS14915 (BAY15_2922) - 3350045..3350452 (-) 408 WP_068853800.1 hypothetical protein -
  BAY15_RS14920 (BAY15_2923) - 3350650..3351126 (-) 477 WP_157771755.1 hypothetical protein -
  BAY15_RS14925 - 3351518..3352000 (-) 483 WP_068853802.1 hypothetical protein -
  BAY15_RS14930 (BAY15_2924) - 3352209..3352571 (-) 363 WP_157771756.1 hypothetical protein -
  BAY15_RS19245 - 3353217..3353489 (-) 273 WP_157771757.1 hypothetical protein -
  BAY15_RS14935 - 3354453..3354749 (-) 297 WP_157771758.1 hypothetical protein -
  BAY15_RS19250 - 3354749..3354967 (-) 219 WP_157771759.1 hypothetical protein -
  BAY15_RS19255 - 3355351..3355707 (-) 357 WP_157771760.1 hypothetical protein -
  BAY15_RS14945 (BAY15_2926) - 3355819..3356037 (-) 219 WP_157771761.1 hypothetical protein -
  BAY15_RS14950 (BAY15_2927) - 3357011..3357385 (-) 375 WP_157771762.1 DUF6869 domain-containing protein -
  BAY15_RS14955 (BAY15_2928) - 3357844..3358548 (-) 705 WP_157771763.1 hypothetical protein -
  BAY15_RS14960 (BAY15_2929) - 3358642..3359421 (-) 780 WP_068853809.1 hypothetical protein -
  BAY15_RS19260 - 3359443..3359823 (-) 381 WP_157771764.1 hypothetical protein -
  BAY15_RS14965 (BAY15_2930) - 3360307..3360837 (-) 531 WP_157771765.1 hypothetical protein -
  BAY15_RS14975 (BAY15_2931) - 3361810..3364848 (-) 3039 WP_068853812.1 hypothetical protein -
  BAY15_RS14980 (BAY15_2932) pilB 3365132..3366865 (-) 1734 WP_068853813.1 type IV-A pilus assembly ATPase PilB Machinery gene
  BAY15_RS14985 (BAY15_2933) pilA/pilAI 3366922..3367332 (-) 411 WP_068853814.1 pilin Machinery gene
  BAY15_RS14990 (BAY15_2934) pilA/pilAI 3367451..3367858 (-) 408 WP_068853815.1 pilin Machinery gene
  BAY15_RS14995 (BAY15_2935) pilC 3368215..3369471 (+) 1257 WP_068853816.1 type II secretion system F family protein Machinery gene
  BAY15_RS15000 (BAY15_2936) pilD 3369478..3370341 (+) 864 WP_068853817.1 A24 family peptidase Machinery gene
  BAY15_RS15005 (BAY15_2937) coaE 3370349..3370966 (+) 618 WP_068853818.1 dephospho-CoA kinase -
  BAY15_RS15010 - 3370963..3371304 (-) 342 WP_237334272.1 hypothetical protein -
  BAY15_RS15020 (BAY15_2938) - 3371773..3372258 (-) 486 WP_068853820.1 hypothetical protein -
  BAY15_RS15025 (BAY15_2939) - 3372458..3373825 (-) 1368 WP_068853821.1 HAMP domain-containing sensor histidine kinase -
  BAY15_RS15030 (BAY15_2940) - 3373788..3374465 (-) 678 WP_017356179.1 response regulator transcription factor -
  BAY15_RS15035 (BAY15_2941) - 3374474..3374947 (-) 474 WP_068853822.1 hypothetical protein -
  BAY15_RS15040 (BAY15_2942) rimK 3375180..3376085 (-) 906 WP_068853823.1 30S ribosomal protein S6--L-glutamate ligase -
  BAY15_RS15045 (BAY15_2943) - 3376343..3376729 (+) 387 WP_208856107.1 hypothetical protein -
  BAY15_RS15050 (BAY15_2944) - 3376733..3377704 (+) 972 WP_068853825.1 RES family NAD+ phosphorylase -
  BAY15_RS15055 (BAY15_2945) - 3377711..3378064 (-) 354 WP_068853826.1 nuclear transport factor 2 family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 49964.38 Da        Isoelectric Point: 6.7842

>NTDB_id=186562 BAY15_RS14895 WP_068853796.1 3345333..3346718(+) (pilR) [Stenotrophomonas rhizophila strain QL-P4]
MNENRSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPDGNGIELVTEIAQHYPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNTERPAPPPLTSDTTARLLGESAAMDGLRATITKVAR
SQAPVYILGESGVGKELVARTIHGQSARAAGPFVPVNCGAIPSELMESEFFGHKKGSFSGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSIRPVGAATEVPVDVRILSATHKDLGDLVEDGRFRHDLYYRINVIELRVPPLRERRSDLP
QLAASILARLARTHGRPTPLLAPSALEAMGTYHFPGNVRELENILERALALAEGDTIGASDLRLPQQGVPRHGGAPVAAH
EEAVVDLPAGSGALPSYIEQMERTAIQKALEENRWNKTRTAAQLGITFRALRYKLKKLGMD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=186562 BAY15_RS14895 WP_068853796.1 3345333..3346718(+) (pilR) [Stenotrophomonas rhizophila strain QL-P4]
ATGAACGAAAACCGCAGCGCCCTCGTCGTCGACGACGAACGCGACATCCGCGAACTGCTGGTACTGACCCTGGGCCGCAT
GGGCCTGCGCATCAGCACCGCGGCCAACCTCGCCGAAGCGCGCGAGCTGCTGGCCAGCAACCCCTACGACCTGTGCATCA
CCGACATGCGGCTGCCCGACGGCAACGGCATCGAGCTGGTCACTGAAATCGCCCAGCACTACCCGCGCACCCCGGTGGCG
ATGATCACCGCGTTCGGCAGCATGGACCTGGCGGTGGAAGCGTTGAAGGCCGGCGCGTTCGATTTCGTCAGCAAGCCGGT
GGACATCTCGGTGCTGCGCGGGCTGGTCAAGCACGCGCTGGAACTCAACAACACCGAACGCCCCGCCCCGCCGCCGCTGA
CCAGCGACACCACCGCACGCCTGCTGGGCGAATCGGCGGCGATGGATGGCCTGCGCGCCACCATCACCAAGGTCGCCCGC
AGCCAGGCGCCGGTGTACATCCTGGGCGAATCGGGCGTGGGCAAGGAACTGGTGGCCCGCACCATCCACGGCCAGAGCGC
ACGTGCGGCCGGCCCGTTCGTGCCGGTAAACTGCGGCGCCATTCCATCGGAGCTGATGGAAAGCGAATTCTTCGGGCACA
AGAAGGGCAGCTTCAGCGGCGCCCATGCCGACAAGCCGGGCCTGTTCCAGGCCGCGCATGGCGGCACCCTGTTCCTGGAT
GAAGTGGCCGAACTGCCGCTGCAGATGCAGGTGAAGCTGCTGCGTGCGATCCAGGAGAAATCGATCCGCCCGGTGGGCGC
GGCCACCGAAGTGCCGGTGGATGTGCGCATTCTTTCTGCCACCCACAAGGATCTGGGCGACTTGGTGGAAGATGGGCGGT
TCCGCCACGATCTGTATTACCGCATCAATGTGATCGAACTGCGCGTGCCGCCGCTGCGCGAGCGCCGTAGTGATCTGCCG
CAGTTGGCAGCTTCGATCCTGGCCCGGTTGGCCCGCACGCATGGGCGGCCCACTCCGCTGCTGGCGCCGTCGGCGTTGGA
GGCGATGGGCACGTATCACTTCCCGGGCAACGTGCGCGAACTGGAGAACATCCTGGAGCGCGCGTTGGCGCTGGCCGAGG
GTGACACCATCGGGGCGAGCGATCTTCGGTTGCCGCAGCAGGGTGTGCCGCGGCATGGTGGGGCGCCGGTGGCGGCGCAT
GAGGAAGCGGTGGTGGATCTGCCGGCGGGGAGCGGCGCGCTGCCTTCGTATATCGAGCAGATGGAACGCACCGCGATCCA
GAAGGCGCTGGAAGAGAACCGCTGGAACAAGACGCGGACAGCCGCGCAGTTGGGCATCACCTTCCGCGCGTTGAGGTACA
AGCTGAAAAAGCTGGGAATGGACTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-115)

Sigma-54 interaction domain (Sigma54_activat)

(141-307)

Bacterial regulatory protein, Fis family (HTH_8)

(418-458)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

62.227

99.349

0.618
  pilR Acinetobacter baumannii strain A118

48.712

100

0.492
  luxO Vibrio cholerae strain A1552

36.842

98.915

0.364

Multiple sequence alignment