Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BA177_RS13065 Genome accession   NZ_CP016268
Coordinates   2890249..2890683 (-) Length   144 a.a.
NCBI ID   WP_068616893.1    Uniprot ID   A0A193LHZ3
Organism   Woeseia oceani strain XK5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2885249..2895683
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BA177_RS13045 (BA177_13045) ybeY 2885428..2885901 (-) 474 WP_231892445.1 rRNA maturation RNase YbeY -
  BA177_RS13050 (BA177_13050) - 2885916..2886917 (-) 1002 WP_068616885.1 PhoH family protein -
  BA177_RS13055 (BA177_13055) miaB 2887011..2888351 (-) 1341 WP_068616888.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  BA177_RS13060 (BA177_13060) - 2888397..2890112 (-) 1716 WP_068616891.1 bifunctional sulfate adenylyltransferase/adenylylsulfate kinase -
  BA177_RS13065 (BA177_13065) ssb 2890249..2890683 (-) 435 WP_068616893.1 single-stranded DNA-binding protein Machinery gene
  BA177_RS13070 (BA177_13070) - 2890798..2891994 (-) 1197 WP_231892446.1 MFS transporter -
  BA177_RS13075 (BA177_13075) uvrA 2892194..2895052 (+) 2859 WP_068616895.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 15519.26 Da        Isoelectric Point: 5.2707

>NTDB_id=186423 BA177_RS13065 WP_068616893.1 2890249..2890683(-) (ssb) [Woeseia oceani strain XK5]
MARGINKVIIVGNVGQDPETRYMPSGSAVTNLTIATNESWKDKQSGEQKERTEWHRVAMFGRLAEIAAEYLKKGSQVYVE
GKLRTRKWQDKSGNDRYTTEVIADEMQMLGGGRSGGGAPAAGGSAPSGPAPGPSVDDFDDDIPF

Nucleotide


Download         Length: 435 bp        

>NTDB_id=186423 BA177_RS13065 WP_068616893.1 2890249..2890683(-) (ssb) [Woeseia oceani strain XK5]
ATGGCCCGTGGAATCAATAAAGTCATCATCGTTGGAAACGTCGGGCAGGATCCGGAAACCCGCTACATGCCGAGCGGCTC
AGCGGTTACCAATCTGACGATTGCAACCAACGAATCGTGGAAAGACAAGCAGAGCGGCGAGCAAAAAGAGCGCACCGAGT
GGCATCGTGTGGCGATGTTCGGTCGCCTGGCCGAGATCGCTGCTGAGTACCTTAAGAAAGGTTCTCAGGTCTATGTCGAA
GGCAAATTGCGCACCCGCAAATGGCAGGACAAGTCGGGCAATGACCGTTACACGACGGAAGTGATTGCTGACGAAATGCA
AATGCTGGGCGGTGGTCGCTCCGGTGGTGGTGCGCCGGCAGCAGGTGGTTCTGCTCCGTCGGGTCCGGCACCCGGCCCAT
CAGTGGATGATTTCGACGACGATATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A193LHZ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

55.429

100

0.674
  ssb Glaesserella parasuis strain SC1401

49.721

100

0.618
  ssb Neisseria meningitidis MC58

43.353

100

0.521
  ssb Neisseria gonorrhoeae MS11

43.353

100

0.521

Multiple sequence alignment