Detailed information NTG0186416

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: A6J72_RS05015
• Genome accession: NZ_CP020433
• Coordinates: 1019755..1020753 (-)
• Length: 332 a.a.
• NCBI ID: WP_014829554.1
• Uniprot ID: -
• Organism: Streptococcus intermedius strain FDAARGOS_233
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1014755..1025753

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
A6J72_RS05000 (A6J72_05015)	-	1014907..1016369 (-)	1463	Protein_979	SpaH/EbpB family LPXTG-anchored major pilin	-
A6J72_RS05005 (A6J72_05020)	-	1016423..1018831 (-)	2409	WP_225791014.1	Sgo0707 family adhesin	-
A6J72_RS05010 (A6J72_05025)	-	1019183..1019749 (-)	567	WP_082311923.1	nucleotidyltransferase family protein	-
A6J72_RS05015 (A6J72_05030)	ruvB	1019755..1020753 (-)	999	WP_014829554.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
A6J72_RS05020 (A6J72_05035)	-	1021162..1021929 (+)	768	WP_082311924.1	N-acetylmuramoyl-L-alanine amidase family protein	-
A6J72_RS05025 (A6J72_05040)	-	1022025..1023071 (-)	1047	WP_082311925.1	aldose epimerase family protein	-
A6J72_RS05030 (A6J72_05045)	lacD	1023114..1024115 (-)	1002	WP_009567742.1	tagatose-bisphosphate aldolase	-
A6J72_RS05035 (A6J72_05050)	-	1024126..1025295 (-)	1170	WP_041787647.1	SIS domain-containing protein	-

Sequence

Protein

• Length: 332 a.a.
• Molecular weight: 37511.89 Da
• Isoelectric Point: 4.4340

>NTDB_id=186416 A6J72_RS05015 WP_014829554.1 1019755..1020753(-) (ruvB) [Streptococcus intermedius strain FDAARGOS_233]
MNRMLDNELMGDEELVERTLRPQYLQEYIGQNKVKNQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMAFVIANELGVNL
KQTSGPVIEKSGDLVAILNDLEPGDVLFIDEIHRLPMSVEEVLYSAMEDFYIDIMIGSGETSRSVHLDLPPFTLIGATTR
AGMLSNPLRARFGITGHMEYYEETDLTEIVERTAEIFEMEITHEAAEELALRSRGTPRIANRLLKRVRDFAQIMGNGLID
NRITDQALTMLDVDQEGLDYVDQKILKTMIEVYGGGPVGLGTLSVNIAEEQETVEDMYEPYLIQKGFVMRTRTGRVATRK
AYEHLGYEYLEK

Nucleotide

• Length: 999 bp

>NTDB_id=186416 A6J72_RS05015 WP_014829554.1 1019755..1020753(-) (ruvB) [Streptococcus intermedius strain FDAARGOS_233]
ATGAATAGAATGTTAGATAATGAATTGATGGGAGACGAAGAGCTCGTTGAGCGGACATTGCGTCCCCAGTACTTACAAGA
ATATATAGGCCAAAATAAGGTTAAAAATCAACTGAAGATTTTTATTGAGGCAGCCAAGTTGCGAGATGAGGCATTAGATC
ATACCTTACTTTTCGGACCTCCGGGATTGGGTAAAACGACGATGGCTTTTGTGATCGCCAATGAGCTAGGAGTCAATCTC
AAACAGACTTCGGGGCCTGTGATTGAGAAATCGGGCGATTTGGTAGCGATCTTGAATGATCTGGAGCCAGGAGATGTCCT
TTTTATCGATGAAATTCATCGCTTGCCCATGTCTGTTGAAGAAGTGCTTTACAGTGCTATGGAAGATTTTTACATTGATA
TTATGATTGGTTCTGGTGAAACTAGTCGCAGTGTTCACTTGGATTTACCACCTTTTACTTTGATTGGGGCAACGACACGA
GCTGGTATGTTGTCAAATCCCTTGCGGGCTCGCTTTGGTATTACTGGACATATGGAATACTATGAAGAGACGGATTTGAC
CGAGATTGTAGAGCGAACGGCCGAAATCTTTGAGATGGAGATTACACATGAAGCGGCTGAGGAGTTGGCTTTACGTAGCA
GAGGGACTCCTCGAATTGCCAATCGGCTTCTCAAACGCGTACGAGATTTTGCTCAAATCATGGGGAACGGATTGATTGAT
AATCGGATTACCGATCAAGCCCTGACGATGCTTGATGTGGATCAAGAAGGCTTAGACTATGTGGATCAGAAGATTCTTAA
AACCATGATTGAGGTGTATGGAGGCGGACCTGTTGGTTTAGGAACCTTGTCTGTCAATATTGCAGAAGAGCAAGAAACGG
TGGAAGATATGTATGAGCCATACTTGATTCAGAAAGGCTTTGTTATGCGAACTCGAACAGGACGTGTAGCAACGCGTAAA
GCTTATGAGCATTTGGGTTATGAATATTTAGAAAAGTAG

Domains

Predicted by InterProScan.

• RuvB AAA lid domain (AAA_lid_4) (181-254)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (20-178)

• RuvB C-terminal winged helix domain (WHD_RuvB) (256-325)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Streptococcus pneumoniae TIGR4	90.663	100	0.907
ruvB	Streptococcus pneumoniae R6	90.361	100	0.904
ruvB	Streptococcus pneumoniae D39	90.361	100	0.904
ruvB	Bacillus subtilis subsp. subtilis str. 168	59.509	98.193	0.584
ruvB	Helicobacter pylori 26695	51.393	97.289	0.5
ruvB	Synechocystis sp. PCC 6803	50.645	93.373	0.473