Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BAU10_RS13405 Genome accession   NZ_CP016224
Coordinates   2937621..2938160 (-) Length   179 a.a.
NCBI ID   WP_005381235.1    Uniprot ID   A0AAW9BS04
Organism   Vibrio alginolyticus strain ZJ-T     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2932621..2943160
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAU10_RS13385 (BAU10_13385) - 2932940..2933272 (-) 333 WP_065274907.1 MSHA biogenesis protein MshK -
  BAU10_RS13390 (BAU10_13390) gspM 2933265..2933915 (-) 651 WP_005381197.1 type II secretion system protein GspM -
  BAU10_RS13395 (BAU10_13395) - 2933912..2935357 (-) 1446 WP_065274908.1 MSHA biogenesis protein MshI -
  BAU10_RS13400 (BAU10_13400) csrD 2935369..2937378 (-) 2010 WP_005381201.1 RNase E specificity factor CsrD -
  BAU10_RS13405 (BAU10_13405) ssb 2937621..2938160 (-) 540 WP_005381235.1 single-stranded DNA-binding protein Machinery gene
  BAU10_RS13410 (BAU10_13410) qstR 2938438..2939082 (+) 645 WP_005381237.1 LuxR C-terminal-related transcriptional regulator Regulator
  BAU10_RS13415 (BAU10_13415) galU 2939242..2940114 (+) 873 WP_005381239.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  BAU10_RS13420 (BAU10_13420) uvrA 2940264..2943086 (+) 2823 WP_005381241.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 19892.93 Da        Isoelectric Point: 4.9164

>NTDB_id=186366 BAU10_RS13405 WP_005381235.1 2937621..2938160(-) (ssb) [Vibrio alginolyticus strain ZJ-T]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSDSWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGGAPMGGQQQQQGGWGQPQQPAQQQYNAPQQQQPQQQAPQ
QSQQQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=186366 BAU10_RS13405 WP_005381235.1 2937621..2938160(-) (ssb) [Vibrio alginolyticus strain ZJ-T]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCGAATGG
CGGTGCAGTAGCAAACATTACTATTGCGACTTCTGATTCATGGCGTGATAAAGCGACTGGCGAACAGCGCGAAAAAACGG
AATGGCACCGTGTTGTGTTGTTCGGCAAACTTGCGGAAGTAGCAGGTGAGTACTTGCGTAAAGGCTCTCAAGTTTACATT
GAAGGGCAACTGCAAACTCGCAAATGGCAAGATCAAAGTGGCCAAGATCGCTACTCAACTGAAGTCGTTGTTCAAGGCTT
CAATGGTGTGATGCAAATGCTTGGCGGTCGTGCTCAAGGTGGCGGCGCACCAATGGGCGGTCAACAGCAGCAACAAGGTG
GATGGGGTCAGCCTCAACAGCCAGCTCAGCAGCAGTACAATGCGCCTCAGCAACAGCAACCACAACAACAGGCTCCGCAG
CAATCACAGCAGCAGTACAATGAGCCACCAATGGATTTTGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

80.328

100

0.821
  ssb Glaesserella parasuis strain SC1401

54.922

100

0.592
  ssb Neisseria meningitidis MC58

46.328

98.883

0.458
  ssb Neisseria gonorrhoeae MS11

46.328

98.883

0.458

Multiple sequence alignment