Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   A4W79_RS09995 Genome accession   NZ_CP016221
Coordinates   1923992..1924504 (-) Length   170 a.a.
NCBI ID   WP_004265848.1    Uniprot ID   A0A0B2XPH3
Organism   Latilactobacillus curvatus strain TMW 1.421     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1918992..1929504
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4W79_RS09975 (A4W79_09870) dnaB 1919453..1920856 (-) 1404 WP_172821848.1 replicative DNA helicase -
  A4W79_RS09980 (A4W79_09875) rplI 1921001..1921453 (-) 453 WP_253726635.1 50S ribosomal protein L9 -
  A4W79_RS09985 (A4W79_09880) - 1921475..1923505 (-) 2031 WP_069467795.1 DHH family phosphoesterase -
  A4W79_RS09990 (A4W79_09885) rpsR 1923722..1923961 (-) 240 WP_004265822.1 30S ribosomal protein S18 -
  A4W79_RS09995 (A4W79_09890) ssb 1923992..1924504 (-) 513 WP_004265848.1 single-stranded DNA-binding protein Machinery gene
  A4W79_RS10000 (A4W79_09895) rpsF 1924544..1924840 (-) 297 WP_004265809.1 30S ribosomal protein S6 -
  A4W79_RS10005 (A4W79_09900) gyrA 1925083..1927668 (-) 2586 WP_253726637.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18621.16 Da        Isoelectric Point: 4.6856

>NTDB_id=186334 A4W79_RS09995 WP_004265848.1 1923992..1924504(-) (ssb) [Latilactobacillus curvatus strain TMW 1.421]
MINRVVLVGRLTRDVDLRYTSSGAAVGTFSIAVNRQFTNANGDREADFINCVIWRKSAENFANFTKKGSLVGVDGRLQTR
NYENQQGQRVYVTEVVVDNFSLLESRTTTEQRQGDGASQNFNNNQSNGSQQSGFTSPQQSGNPSAANNTQADPFANNGQA
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=186334 A4W79_RS09995 WP_004265848.1 1923992..1924504(-) (ssb) [Latilactobacillus curvatus strain TMW 1.421]
ATGATTAATCGAGTTGTACTCGTTGGTCGGCTAACACGCGATGTTGACTTACGTTACACTTCTAGTGGTGCTGCTGTTGG
GACTTTCTCAATCGCAGTGAACCGTCAATTCACGAATGCCAATGGTGATCGTGAAGCAGACTTTATCAACTGTGTCATCT
GGCGTAAATCAGCGGAAAATTTCGCTAATTTCACTAAGAAAGGCTCACTAGTCGGAGTTGATGGCCGTCTACAAACGAGA
AATTATGAAAACCAACAAGGTCAACGTGTATACGTAACCGAAGTGGTCGTTGATAACTTCTCATTGTTAGAATCACGGAC
AACAACGGAGCAACGGCAAGGGGATGGCGCAAGCCAAAACTTTAACAACAATCAAAGCAATGGTAGCCAACAATCTGGAT
TTACCAGCCCTCAACAATCGGGTAATCCATCAGCTGCAAATAACACTCAAGCCGATCCATTTGCAAATAATGGTCAAGCA
ATTGATATTTCAGATGATGATTTACCTTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0B2XPH3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

97.059

100

0.971
  ssbA Bacillus subtilis subsp. subtilis str. 168

56

100

0.576
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

62.353

0.371
  ssb Glaesserella parasuis strain SC1401

33.155

100

0.365

Multiple sequence alignment