Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   A6J30_RS03575 Genome accession   NZ_CP020427
Coordinates   767132..768136 (-) Length   334 a.a.
NCBI ID   WP_005457270.1    Uniprot ID   Q87QU7
Organism   Vibrio parahaemolyticus strain FDAARGOS_191     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 762132..773136
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J30_RS03545 (A6J30_03430) tolQ 762236..762934 (-) 699 WP_005483599.1 protein TolQ -
  A6J30_RS03550 (A6J30_03435) ybgC 762924..763343 (-) 420 WP_005483618.1 tol-pal system-associated acyl-CoA thioesterase -
  A6J30_RS03555 (A6J30_03440) ybgE 763516..763818 (-) 303 WP_005495828.1 cyd operon protein YbgE -
  A6J30_RS03560 (A6J30_03445) cydX 763811..763918 (-) 108 WP_000270284.1 cytochrome bd-I oxidase subunit CydX -
  A6J30_RS03565 (A6J30_03450) cydB 763931..765067 (-) 1137 WP_005483614.1 cytochrome d ubiquinol oxidase subunit II -
  A6J30_RS03570 (A6J30_03455) cydA 765085..766671 (-) 1587 WP_005457265.1 cytochrome ubiquinol oxidase subunit I -
  A6J30_RS03575 (A6J30_03460) ruvB 767132..768136 (-) 1005 WP_005457270.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  A6J30_RS03580 (A6J30_03465) ruvA 768158..768772 (-) 615 WP_005486097.1 Holliday junction branch migration protein RuvA -
  A6J30_RS03585 (A6J30_03470) - 768851..770302 (-) 1452 WP_005483104.1 methyl-accepting chemotaxis protein -
  A6J30_RS03590 (A6J30_03475) ruvC 770424..770945 (-) 522 WP_005457261.1 crossover junction endodeoxyribonuclease RuvC -
  A6J30_RS03595 (A6J30_03480) aspS 771074..772852 (-) 1779 WP_005483110.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 37226.63 Da        Isoelectric Point: 4.7025

>NTDB_id=186294 A6J30_RS03575 WP_005457270.1 767132..768136(-) (ruvB) [Vibrio parahaemolyticus strain FDAARGOS_191]
MIEADRLIAPENPAFRDEDVIDRAIRPKKLADYQGQDHVRDQMEIFIKAAQLRSEALDHLLIFGPPGLGKTTLANIVANE
MEVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSPMVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLI
GATTRAGSLTSPLRDRFGITQRLEYYKVQDLQNIVQRSADCLGLSMEPEGALEVARRARGTPRIANRLLRRVRDYAEVKG
NGHICADVADKALNMLDVDAQGFDYMDRKLLLAIMEKFGGGPVGLDNMAAAIGEEKDTIEDVLEPYLIQQGYLQRTPRGR
IATDRAYLHFGIEK

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=186294 A6J30_RS03575 WP_005457270.1 767132..768136(-) (ruvB) [Vibrio parahaemolyticus strain FDAARGOS_191]
ATGATTGAAGCCGATCGTTTAATCGCTCCTGAAAATCCAGCGTTTCGTGATGAAGATGTTATTGACCGTGCTATTCGCCC
TAAAAAGTTGGCGGATTACCAAGGTCAGGATCATGTCCGTGATCAGATGGAGATTTTCATCAAAGCGGCACAATTGCGTA
GTGAGGCGTTAGACCACCTACTTATTTTTGGCCCTCCAGGTTTGGGTAAAACGACGTTGGCAAACATTGTTGCTAACGAA
ATGGAAGTGAACATCCGTACTACTTCTGGACCTGTTCTCGAAAAAGCAGGCGATTTGGCCGCGTTGTTGACCAATCTTGA
GGAAAACGACGTGCTTTTCATTGATGAGATCCATCGTCTTAGCCCTATGGTCGAAGAGGTGCTGTATCCGGCAATGGAAG
ATTACCAATTGGACATCATGATTGGTGAAGGCCCGGCCGCACGTTCTATCAAAATTGATTTGCCACCATTCACATTGATT
GGTGCAACGACGCGTGCGGGGTCTTTGACTTCTCCGCTGCGTGACCGTTTTGGTATTACTCAGCGTCTTGAGTACTACAA
AGTGCAAGATCTACAGAACATTGTTCAACGCAGTGCAGATTGCCTAGGGTTGTCGATGGAGCCAGAAGGCGCGTTAGAAG
TTGCTCGACGAGCTCGTGGTACGCCTCGTATTGCGAACCGTCTATTGCGCCGTGTCCGTGACTATGCAGAAGTGAAGGGC
AACGGACATATTTGTGCCGATGTTGCTGACAAAGCGCTTAATATGTTGGATGTCGATGCTCAGGGCTTCGATTACATGGA
CCGCAAGCTTCTTCTCGCTATCATGGAGAAATTTGGTGGTGGTCCAGTTGGACTCGACAATATGGCTGCCGCTATTGGTG
AAGAGAAAGACACCATTGAAGATGTGCTAGAACCATATTTGATTCAGCAAGGCTATTTACAACGCACTCCCCGAGGAAGA
ATCGCCACAGATCGTGCATATCTTCATTTCGGAATTGAAAAATAA

Domains

Predicted by InterProScan.

RuvB AAA lid domain (AAA_lid_4)

(186-259)

RuvB C-terminal winged helix domain (WHD_RuvB)

(261-330)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(25-183)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87QU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

60.486

98.503

0.596
  ruvB Streptococcus pneumoniae TIGR4

58.824

96.707

0.569
  ruvB Streptococcus pneumoniae R6

58.824

96.707

0.569
  ruvB Streptococcus pneumoniae D39

58.824

96.707

0.569
  ruvB Synechocystis sp. PCC 6803

55.987

92.515

0.518
  ruvB Helicobacter pylori 26695

54.276

91.018

0.494

Multiple sequence alignment