Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | Q5O_RS02525 | Genome accession | NZ_CP016212 |
| Coordinates | 574163..574708 (+) | Length | 181 a.a. |
| NCBI ID | WP_003255446.1 | Uniprot ID | I7CBQ6 |
| Organism | Pseudomonas putida JB | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 569163..579708
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| Q5O_RS02510 (Q5O_02510) | bfr | 569258..569722 (+) | 465 | WP_003255449.1 | bacterioferritin | - |
| Q5O_RS02515 (Q5O_02515) | uvrA | 569795..572629 (-) | 2835 | WP_014589478.1 | excinuclease ABC subunit UvrA | - |
| Q5O_RS02520 (Q5O_02520) | - | 572759..574153 (+) | 1395 | WP_014589479.1 | MFS transporter | - |
| Q5O_RS02525 (Q5O_02525) | ssb | 574163..574708 (+) | 546 | WP_003255446.1 | single-stranded DNA-binding protein | Machinery gene |
| Q5O_RS02530 (Q5O_02530) | - | 574797..576179 (-) | 1383 | WP_014589480.1 | PLP-dependent aminotransferase family protein | - |
| Q5O_RS02535 (Q5O_02535) | - | 576380..577165 (+) | 786 | WP_014589481.1 | sulfite exporter TauE/SafE family protein | - |
| Q5O_RS02540 (Q5O_02540) | - | 577187..577948 (+) | 762 | WP_014589482.1 | SDR family NAD(P)-dependent oxidoreductase | - |
Sequence
Protein
Download Length: 181 a.a. Molecular weight: 20059.16 Da Isoelectric Point: 5.9286
>NTDB_id=186206 Q5O_RS02525 WP_003255446.1 574163..574708(+) (ssb) [Pseudomonas putida JB]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVERTEWHRVSLFGKVAEIAGEYLRKGSQCYIE
GKLQTREWEKDGIKRYTTEIIVDINGTMQLLGGRPQGQQQGGDPYNQGGGNYGGGQQQQYNQAPPRQQAQRPQQAPQRPA
PQQPAPQPAADFDSFDDDIPF
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVERTEWHRVSLFGKVAEIAGEYLRKGSQCYIE
GKLQTREWEKDGIKRYTTEIIVDINGTMQLLGGRPQGQQQGGDPYNQGGGNYGGGQQQQYNQAPPRQQAQRPQQAPQRPA
PQQPAPQPAADFDSFDDDIPF
Nucleotide
Download Length: 546 bp
>NTDB_id=186206 Q5O_RS02525 WP_003255446.1 574163..574708(+) (ssb) [Pseudomonas putida JB]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTCGGTACCTGTGGCCAGGATCCCGAAGTCCGCTACCTGCCCAACGGTAA
CGCCGTGACCAACCTGAGCCTGGCCACCAGCGAGCAGTGGACTGACAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAGT
GGCACCGTGTGTCGCTGTTCGGCAAGGTTGCCGAAATCGCTGGCGAATACCTGCGCAAGGGTTCGCAGTGCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACCGAGATCATCGTCGACATCAACGGCAC
CATGCAGCTGCTCGGCGGTCGTCCGCAAGGCCAGCAGCAGGGCGGCGACCCGTACAATCAGGGTGGCGGCAATTATGGTG
GTGGCCAGCAGCAACAGTACAACCAGGCACCGCCACGCCAGCAGGCCCAGCGCCCGCAACAGGCCCCTCAGCGCCCAGCG
CCGCAACAGCCTGCGCCGCAGCCGGCGGCTGACTTCGACAGCTTCGATGACGATATTCCGTTCTGA
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTCGGTACCTGTGGCCAGGATCCCGAAGTCCGCTACCTGCCCAACGGTAA
CGCCGTGACCAACCTGAGCCTGGCCACCAGCGAGCAGTGGACTGACAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAGT
GGCACCGTGTGTCGCTGTTCGGCAAGGTTGCCGAAATCGCTGGCGAATACCTGCGCAAGGGTTCGCAGTGCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACCGAGATCATCGTCGACATCAACGGCAC
CATGCAGCTGCTCGGCGGTCGTCCGCAAGGCCAGCAGCAGGGCGGCGACCCGTACAATCAGGGTGGCGGCAATTATGGTG
GTGGCCAGCAGCAACAGTACAACCAGGCACCGCCACGCCAGCAGGCCCAGCGCCCGCAACAGGCCCCTCAGCGCCCAGCG
CCGCAACAGCCTGCGCCGCAGCCGGCGGCTGACTTCGACAGCTTCGATGACGATATTCCGTTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
56.831 |
100 |
0.575 |
| ssb | Glaesserella parasuis strain SC1401 |
47.12 |
100 |
0.497 |
| ssb | Neisseria meningitidis MC58 |
48.634 |
100 |
0.492 |
| ssb | Neisseria gonorrhoeae MS11 |
48.634 |
100 |
0.492 |