Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   dqs_RS17375 Genome accession   NZ_CP016210
Coordinates   3809467..3809949 (-) Length   160 a.a.
NCBI ID   WP_011767108.1    Uniprot ID   A1KAZ5
Organism   Azoarcus olearius strain DQS-4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3804467..3814949
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  dqs_RS17360 (dqs_3521) - 3805181..3805636 (-) 456 WP_011767105.1 response regulator -
  dqs_RS17365 (dqs_3522) - 3805719..3808325 (-) 2607 WP_065341273.1 PAS domain-containing protein -
  dqs_RS17370 (dqs_3523) - 3808322..3809290 (-) 969 WP_011767107.1 ABC transporter substrate-binding protein -
  dqs_RS17375 (dqs_3524) ssb 3809467..3809949 (-) 483 WP_011767108.1 single-stranded DNA-binding protein Machinery gene
  dqs_RS17380 (dqs_3525) - 3810001..3811206 (-) 1206 WP_179947998.1 MFS transporter -
  dqs_RS17385 (dqs_3526) uvrA 3811322..3814159 (+) 2838 WP_065341274.1 excinuclease ABC subunit UvrA -
  dqs_RS17390 (dqs_3527) - 3814239..3814538 (+) 300 WP_065341275.1 hypothetical protein -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17708.57 Da        Isoelectric Point: 5.9703

>NTDB_id=186199 dqs_RS17375 WP_011767108.1 3809467..3809949(-) (ssb) [Azoarcus olearius strain DQS-4]
MASVNKVILIGNLGADPESRFAPSGDAICNIRLATTENWRDKSTGERREATEWHRVSFYGKLAEIAGQYLRKGSQVYIEG
SLRTRKWQDQNGQERYTTEIRADEMKMLGRREGGDAPMRGGDDGYSAPAPRQQAAPAPASRPAPQRDSGGFGDFDDDIPF

Nucleotide


Download         Length: 483 bp        

>NTDB_id=186199 dqs_RS17375 WP_011767108.1 3809467..3809949(-) (ssb) [Azoarcus olearius strain DQS-4]
ATGGCATCCGTCAACAAAGTCATTCTGATCGGCAACCTCGGCGCCGATCCGGAAAGCCGCTTCGCCCCCTCGGGCGATGC
GATCTGCAACATCCGTCTCGCGACGACCGAAAACTGGCGCGACAAGTCCACTGGCGAGCGCCGCGAAGCGACCGAGTGGC
ACCGGGTGTCGTTCTACGGCAAGCTCGCCGAAATCGCCGGCCAGTACTTGCGCAAGGGGAGCCAGGTCTATATCGAAGGC
AGCCTGCGCACGCGCAAGTGGCAGGACCAGAACGGCCAGGAGCGCTACACCACCGAGATCCGGGCCGACGAGATGAAGAT
GCTCGGCCGCCGCGAAGGTGGCGATGCGCCGATGCGCGGTGGCGACGATGGCTACAGCGCGCCCGCGCCGCGCCAGCAGG
CCGCCCCTGCGCCCGCGTCGCGCCCGGCGCCGCAGCGCGACAGCGGCGGTTTCGGCGATTTCGACGACGACATCCCGTTC
TGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A1KAZ5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

55.191

100

0.631
  ssb Glaesserella parasuis strain SC1401

51.351

100

0.594
  ssb Neisseria meningitidis MC58

48.851

100

0.531
  ssb Neisseria gonorrhoeae MS11

46.927

100

0.525

Multiple sequence alignment