Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | A6E01_RS11615 | Genome accession | NZ_CP016177 |
| Coordinates | 2506799..2507359 (-) | Length | 186 a.a. |
| NCBI ID | WP_065210263.1 | Uniprot ID | A0AAN0XWJ8 |
| Organism | Vibrio breoganii strain FF50 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 2501799..2512359
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A6E01_RS11595 (A6E01_11595) | - | 2502181..2502507 (-) | 327 | WP_082961363.1 | MSHA biogenesis protein MshK | - |
| A6E01_RS11600 (A6E01_11600) | pilO | 2502500..2503141 (-) | 642 | WP_065210260.1 | type 4a pilus biogenesis protein PilO | - |
| A6E01_RS11605 (A6E01_11605) | - | 2503141..2504580 (-) | 1440 | WP_065210261.1 | hypothetical protein | - |
| A6E01_RS11610 (A6E01_11610) | csrD | 2504630..2506639 (-) | 2010 | WP_065210262.1 | RNase E specificity factor CsrD | - |
| A6E01_RS11615 (A6E01_11615) | ssb | 2506799..2507359 (-) | 561 | WP_065210263.1 | single-stranded DNA-binding protein | Machinery gene |
| A6E01_RS11620 (A6E01_11620) | - | 2507646..2508281 (+) | 636 | WP_065210264.1 | response regulator transcription factor | - |
| A6E01_RS11625 (A6E01_11625) | galU | 2508389..2509267 (+) | 879 | WP_065210265.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
| A6E01_RS11630 (A6E01_11630) | uvrA | 2509395..2512220 (+) | 2826 | WP_065210266.1 | excinuclease ABC subunit UvrA | - |
Sequence
Protein
Download Length: 186 a.a. Molecular weight: 20718.78 Da Isoelectric Point: 5.7627
>NTDB_id=186092 A6E01_RS11615 WP_065210263.1 2506799..2507359(-) (ssb) [Vibrio breoganii strain FF50]
MASRGVNKVIIMGNLGQDPEVRFAANGNAIANITIATSETWRDKANGEQREKTEWHRVVLFGKTAEIAGEYLKKGSQVYI
EGQLQTRKWQDQSGQDRYTTEVVVQWPTGQMQLLGSRQGGQAPSQNQGGQQYGGALQGGQQQQGGWGQPQQPQVHQPAQQ
QQQQKPQQAPQQYNEPPMDFDDDIPF
MASRGVNKVIIMGNLGQDPEVRFAANGNAIANITIATSETWRDKANGEQREKTEWHRVVLFGKTAEIAGEYLKKGSQVYI
EGQLQTRKWQDQSGQDRYTTEVVVQWPTGQMQLLGSRQGGQAPSQNQGGQQYGGALQGGQQQQGGWGQPQQPQVHQPAQQ
QQQQKPQQAPQQYNEPPMDFDDDIPF
Nucleotide
Download Length: 561 bp
>NTDB_id=186092 A6E01_RS11615 WP_065210263.1 2506799..2507359(-) (ssb) [Vibrio breoganii strain FF50]
ATGGCTAGCCGTGGCGTCAACAAAGTAATTATTATGGGTAACTTAGGACAAGATCCTGAGGTTCGTTTCGCCGCAAATGG
CAATGCAATTGCAAACATTACAATTGCTACCTCTGAAACTTGGCGAGACAAAGCCAATGGCGAGCAACGCGAGAAAACAG
AATGGCACCGTGTTGTTCTGTTTGGTAAGACTGCTGAGATTGCAGGTGAGTACCTTAAAAAGGGTTCACAAGTATACATC
GAAGGCCAATTGCAAACTCGTAAGTGGCAGGATCAATCAGGCCAAGATCGCTATACAACTGAAGTTGTTGTTCAGTGGCC
TACTGGTCAGATGCAACTGCTAGGCTCTCGTCAAGGTGGTCAAGCTCCTTCACAAAACCAAGGTGGCCAGCAGTACGGTG
GCGCTCTTCAAGGTGGTCAACAGCAACAAGGCGGTTGGGGTCAACCTCAACAACCTCAAGTTCATCAGCCAGCTCAACAG
CAACAGCAGCAGAAGCCACAACAGGCTCCTCAGCAGTACAATGAGCCGCCAATGGATTTTGACGACGACATTCCGTTCTA
A
ATGGCTAGCCGTGGCGTCAACAAAGTAATTATTATGGGTAACTTAGGACAAGATCCTGAGGTTCGTTTCGCCGCAAATGG
CAATGCAATTGCAAACATTACAATTGCTACCTCTGAAACTTGGCGAGACAAAGCCAATGGCGAGCAACGCGAGAAAACAG
AATGGCACCGTGTTGTTCTGTTTGGTAAGACTGCTGAGATTGCAGGTGAGTACCTTAAAAAGGGTTCACAAGTATACATC
GAAGGCCAATTGCAAACTCGTAAGTGGCAGGATCAATCAGGCCAAGATCGCTATACAACTGAAGTTGTTGTTCAGTGGCC
TACTGGTCAGATGCAACTGCTAGGCTCTCGTCAAGGTGGTCAAGCTCCTTCACAAAACCAAGGTGGCCAGCAGTACGGTG
GCGCTCTTCAAGGTGGTCAACAGCAACAAGGCGGTTGGGGTCAACCTCAACAACCTCAAGTTCATCAGCCAGCTCAACAG
CAACAGCAGCAGAAGCCACAACAGGCTCCTCAGCAGTACAATGAGCCGCCAATGGATTTTGACGACGACATTCCGTTCTA
A
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
70.681 |
100 |
0.726 |
| ssb | Glaesserella parasuis strain SC1401 |
50.273 |
98.387 |
0.495 |
| ssb | Neisseria meningitidis MC58 |
42.781 |
100 |
0.43 |
| ssb | Neisseria gonorrhoeae MS11 |
42.781 |
100 |
0.43 |