Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   A6E01_RS03695 Genome accession   NZ_CP016177
Coordinates   780999..781304 (+) Length   101 a.a.
NCBI ID   WP_017027466.1    Uniprot ID   A0AAJ5EMB9
Organism   Vibrio breoganii strain FF50     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 775999..786304
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6E01_RS03680 (A6E01_03680) lon 776023..778368 (+) 2346 WP_017027463.1 endopeptidase La -
  A6E01_RS03685 (A6E01_03685) - 778564..778836 (+) 273 WP_017027464.1 HU family DNA-binding protein -
  A6E01_RS03690 (A6E01_03690) ppiD 778996..780852 (+) 1857 WP_065209592.1 peptidylprolyl isomerase -
  A6E01_RS03695 (A6E01_03695) comEA 780999..781304 (+) 306 WP_017027466.1 ComEA family DNA-binding protein Machinery gene
  A6E01_RS03700 (A6E01_03700) rrtA 781313..781849 (-) 537 WP_237334491.1 rhombosortase -
  A6E01_RS03705 (A6E01_03705) - 781856..782470 (+) 615 WP_065209594.1 tRNA-uridine aminocarboxypropyltransferase -
  A6E01_RS03710 (A6E01_03710) - 782478..783791 (-) 1314 WP_065209595.1 anti-phage deoxyguanosine triphosphatase -
  A6E01_RS03715 (A6E01_03715) yfbR 783814..784401 (-) 588 WP_065209596.1 5'-deoxynucleotidase -
  A6E01_RS03720 (A6E01_03720) - 784458..785672 (-) 1215 WP_017027471.1 pyridoxal phosphate-dependent aminotransferase -

Sequence

Protein


Download         Length: 101 a.a.        Molecular weight: 11099.96 Da        Isoelectric Point: 5.1651

>NTDB_id=186076 A6E01_RS03695 WP_017027466.1 780999..781304(+) (comEA) [Vibrio breoganii strain FF50]
MGLTMIKRLWVIALLALVPVIGYAADEMKGDKYEGIEIEVNINTASSDELATLLLGVGETKAKQIVAFREVHGEFKDADE
LQMVKGIGQATVDKNRARIRL

Nucleotide


Download         Length: 306 bp        

>NTDB_id=186076 A6E01_RS03695 WP_017027466.1 780999..781304(+) (comEA) [Vibrio breoganii strain FF50]
ATGGGATTAACGATGATAAAGCGTTTGTGGGTCATTGCACTTTTAGCGCTAGTACCGGTTATAGGGTATGCCGCAGATGA
GATGAAGGGCGATAAATACGAAGGTATTGAGATTGAAGTGAACATCAATACTGCCTCTAGTGACGAGCTCGCAACACTAC
TGCTTGGGGTAGGAGAAACAAAGGCAAAACAAATCGTCGCCTTTCGTGAGGTGCATGGTGAATTCAAAGATGCTGATGAG
TTGCAGATGGTGAAAGGAATCGGGCAGGCGACAGTCGATAAAAATCGCGCTCGTATCCGGTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(39-100)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio campbellii strain DS40M4

53.125

95.05

0.505
  comEA Vibrio parahaemolyticus RIMD 2210633

54.348

91.089

0.495
  comEA Vibrio cholerae C6706

48.485

98.02

0.475
  comEA Vibrio cholerae strain A1552

48.485

98.02

0.475

Multiple sequence alignment