Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BAU07_RS25450 Genome accession   NZ_CP016172
Coordinates   5714659..5715180 (-) Length   173 a.a.
NCBI ID   WP_066664068.1    Uniprot ID   A0A193GKS1
Organism   Bordetella flabilis strain AU10664     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5709659..5720180
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAU07_RS25440 (BAU07_25440) - 5709974..5713180 (-) 3207 WP_066664058.1 efflux RND transporter permease subunit -
  BAU07_RS25445 (BAU07_25445) - 5713515..5714438 (+) 924 WP_066664066.1 LysR family transcriptional regulator -
  BAU07_RS25450 (BAU07_25450) ssb 5714659..5715180 (-) 522 WP_066664068.1 single-stranded DNA-binding protein Machinery gene
  BAU07_RS25455 (BAU07_25455) - 5715484..5716668 (-) 1185 WP_066664070.1 MFS transporter -
  BAU07_RS25460 (BAU07_25460) uvrA 5716779..5719676 (+) 2898 WP_066664072.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18674.64 Da        Isoelectric Point: 5.9791

>NTDB_id=185986 BAU07_RS25450 WP_066664068.1 5714659..5715180(-) (ssb) [Bordetella flabilis strain AU10664]
MASVNKVILVGNLGRDPEVRYSPEGSAICNLSLATTSQWKDKASGEKREETEWHRVVMYNRLAEIAGEYLKKGRSVYIEG
RLKTRKWQDKDTGADRYSTEIVADQMQMLGGREGGGEGGYGGGGGGGYEDAPQQRPARQQQQRPAPQRPASQPAGGGGGG
AANLTDMDDDIPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=185986 BAU07_RS25450 WP_066664068.1 5714659..5715180(-) (ssb) [Bordetella flabilis strain AU10664]
ATGGCATCGGTCAATAAAGTCATCCTCGTCGGCAACCTCGGGCGCGATCCCGAAGTGCGCTACAGCCCCGAAGGCAGCGC
AATTTGCAACCTGTCCCTGGCCACCACCTCGCAGTGGAAGGACAAGGCATCCGGCGAAAAGCGCGAGGAAACCGAATGGC
ACCGCGTCGTCATGTACAACCGCCTGGCCGAGATCGCCGGTGAGTACCTGAAGAAGGGGCGCTCGGTGTATATCGAAGGC
CGCCTGAAGACTCGTAAATGGCAGGACAAGGATACGGGTGCTGATCGCTACAGCACCGAGATCGTTGCCGACCAGATGCA
GATGTTGGGCGGACGTGAAGGCGGCGGCGAAGGCGGGTATGGCGGCGGTGGCGGCGGCGGGTATGAGGATGCGCCGCAGC
AGCGTCCGGCACGGCAGCAGCAACAGCGACCCGCGCCGCAGCGGCCGGCGAGTCAGCCGGCTGGCGGTGGCGGCGGTGGC
GCGGCGAATTTGACGGATATGGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A193GKS1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

55.135

100

0.59
  ssb Neisseria gonorrhoeae MS11

51.685

100

0.532
  ssb Neisseria meningitidis MC58

51.977

100

0.532
  ssb Glaesserella parasuis strain SC1401

47.895

100

0.526

Multiple sequence alignment