Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   A9404_RS08105 Genome accession   NZ_CP016027
Coordinates   1856770..1857315 (-) Length   181 a.a.
NCBI ID   WP_066100029.1    Uniprot ID   A0A191ZHM5
Organism   Halothiobacillus diazotrophicus strain LS2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1851770..1862315
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A9404_RS08095 (A9404_08095) casA 1852032..1853576 (-) 1545 WP_066100024.1 type I-E CRISPR-associated protein Cse1/CasA -
  A9404_RS08100 (A9404_08100) cas3 1853573..1856269 (-) 2697 WP_197490310.1 CRISPR-associated helicase Cas3' -
  A9404_RS08105 (A9404_08105) ssb 1856770..1857315 (-) 546 WP_066100029.1 single-stranded DNA-binding protein Machinery gene
  A9404_RS08110 (A9404_08110) uvrA 1857472..1860300 (+) 2829 WP_066100032.1 excinuclease ABC subunit UvrA -
  A9404_RS08115 (A9404_08115) - 1860320..1861120 (-) 801 WP_082922838.1 hypothetical protein -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 19266.16 Da        Isoelectric Point: 5.9651

>NTDB_id=185423 A9404_RS08105 WP_066100029.1 1856770..1857315(-) (ssb) [Halothiobacillus diazotrophicus strain LS2]
MASRGINKVIILGNLGKDPEVRYMPSGGQVTNITVATSETWRDKDTGETKENTEWHRVVFFNRLAEIAGEYLKKGSQVYV
EGRLQTRKWQGQDGQDRYTTEIVASEMQMIGGRGGSGSGGGAGSSGGMDDDYGNAPPARGGSRAPAAARSSGNRDSYGAP
PPPPRAPARADQGFGEDDIPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=185423 A9404_RS08105 WP_066100029.1 1856770..1857315(-) (ssb) [Halothiobacillus diazotrophicus strain LS2]
ATGGCCAGTCGCGGAATCAATAAAGTCATCATCTTGGGCAATCTGGGCAAGGACCCCGAGGTGCGGTACATGCCGAGCGG
CGGGCAGGTCACCAACATCACCGTGGCTACCTCCGAAACCTGGCGCGACAAGGACACCGGCGAAACCAAGGAAAACACCG
AGTGGCATCGTGTCGTGTTCTTCAACCGTCTGGCGGAAATTGCCGGCGAATACCTGAAGAAAGGGAGCCAGGTCTATGTG
GAAGGCCGCCTGCAAACCCGCAAATGGCAGGGCCAGGACGGTCAGGACCGCTACACCACCGAAATCGTCGCCAGCGAAAT
GCAGATGATCGGCGGCCGAGGCGGCTCCGGTTCGGGCGGCGGTGCCGGCTCCAGCGGCGGCATGGACGACGACTACGGCA
ACGCCCCGCCGGCCCGTGGCGGTTCCCGCGCCCCGGCGGCAGCCCGCAGCAGCGGCAACCGCGACAGCTACGGCGCACCG
CCCCCGCCGCCGCGCGCTCCAGCCCGTGCGGATCAGGGGTTTGGCGAGGACGATATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A191ZHM5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

54

100

0.597
  ssb Glaesserella parasuis strain SC1401

49.727

100

0.503
  ssb Neisseria meningitidis MC58

49.432

97.238

0.481
  ssb Neisseria gonorrhoeae MS11

49.432

97.238

0.481

Multiple sequence alignment