Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   A9Y61_RS15440 Genome accession   NZ_CP016017
Coordinates   2108723..2108917 (-) Length   64 a.a.
NCBI ID   WP_082282385.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 34769     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2103723..2113917
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A9Y61_RS11380 (A9Y61_11380) pilA 2104410..2105663 (+) 1254 WP_003687004.1 signal recognition particle-docking protein FtsY Machinery gene
  A9Y61_RS15050 - 2105807..2105899 (-) 93 Protein_2122 pilin -
  A9Y61_RS11390 (A9Y61_11390) - 2106037..2106423 (-) 387 Protein_2123 pilin -
  A9Y61_RS11395 (A9Y61_11395) - 2106541..2106957 (-) 417 Protein_2124 pilin -
  A9Y61_RS11400 (A9Y61_11400) lpxC 2107086..2108009 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  A9Y61_RS15440 pilE 2108723..2108917 (-) 195 WP_082282385.1 pilin Machinery gene
  A9Y61_RS15445 pilE 2108926..2109132 (-) 207 WP_082282358.1 pilin Machinery gene
  A9Y61_RS11410 (A9Y61_11410) - 2109071..2109520 (-) 450 Protein_2128 pilin -
  A9Y61_RS11415 (A9Y61_11415) - 2109901..2110296 (-) 396 Protein_2129 pilin -
  A9Y61_RS11420 (A9Y61_11420) - 2110323..2110679 (-) 357 Protein_2130 pilin -
  A9Y61_RS11425 (A9Y61_11425) - 2110679..2111032 (-) 354 Protein_2131 pilin -
  A9Y61_RS14320 - 2111773..2111898 (+) 126 Protein_2132 IS110 family transposase -
  A9Y61_RS14595 (A9Y61_11435) - 2112236..2112367 (-) 132 WP_010356054.1 hypothetical protein -
  A9Y61_RS11440 (A9Y61_11440) - 2112449..2113137 (-) 689 Protein_2134 SprT family zinc-dependent metalloprotease -
  A9Y61_RS11445 (A9Y61_11445) - 2113134..2113879 (-) 746 Protein_2135 lysophospholipid acyltransferase family protein -

Sequence

Protein


Download         Length: 64 a.a.        Molecular weight: 6946.85 Da        Isoelectric Point: 9.3108

>NTDB_id=185254 A9Y61_RS15440 WP_082282385.1 2108723..2108917(-) (pilE) [Neisseria gonorrhoeae strain 34769]
MKGKKLSLWAKREAGSVKWFCGQPVKRTANDDANDTVAADTADTAGKIETKHLPSTCRDEPTAK

Nucleotide


Download         Length: 195 bp        

>NTDB_id=185254 A9Y61_RS15440 WP_082282385.1 2108723..2108917(-) (pilE) [Neisseria gonorrhoeae strain 34769]
ATCAAAGGCAAAAAACTCTCCCTGTGGGCCAAGCGTGAAGCCGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTAAGCG
CACCGCCAACGACGACGCCAACGACACCGTTGCCGCCGACACCGCCGACACCGCCGGCAAAATCGAAACCAAGCACCTGC
CGTCAACCTGCCGCGATGAACCAACTGCCAAATAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(2-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

65.079

98.438

0.641
  pilE Neisseria gonorrhoeae MS11

61.29

96.875

0.594

Multiple sequence alignment