Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   A9Z04_RS14035 Genome accession   NZ_CP016007
Coordinates   2915526..2916062 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain NGF1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2910526..2921062
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A9Z04_RS14015 (A9Z04_14015) aphA 2910814..2911527 (+) 714 WP_001226933.1 acid phosphatase AphA -
  A9Z04_RS14020 (A9Z04_14020) yjbQ 2911638..2912054 (+) 417 WP_000270369.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  A9Z04_RS14025 (A9Z04_14025) yjbR 2912058..2912414 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  A9Z04_RS14030 (A9Z04_14030) uvrA 2912449..2915271 (-) 2823 WP_000357763.1 excinuclease ABC subunit UvrA -
  A9Z04_RS14035 (A9Z04_14035) ssb 2915526..2916062 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  A9Z04_RS14040 (A9Z04_14040) yjcB 2916161..2916442 (-) 282 WP_001296643.1 YjcB family protein -
  A9Z04_RS14045 (A9Z04_14045) pdeC 2916871..2918424 (+) 1554 WP_001350405.1 c-di-GMP phosphodiesterase PdeC -
  A9Z04_RS14050 (A9Z04_14050) soxS 2918460..2918783 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  A9Z04_RS14055 (A9Z04_14055) soxR 2918869..2919333 (+) 465 WP_000412431.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=185038 A9Z04_RS14035 WP_000168305.1 2915526..2916062(+) (ssb) [Escherichia coli strain NGF1]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=185038 A9Z04_RS14035 WP_000168305.1 2915526..2916062(+) (ssb) [Escherichia coli strain NGF1]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCCACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTAGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489

Multiple sequence alignment