Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   A9K64_RS23070 Genome accession   NZ_CP015995
Coordinates   4583276..4583812 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain S51     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 4582046..4607288 4583276..4583812 within 0


Gene organization within MGE regions


Location: 4582046..4607288
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A9K64_RS23060 (A9K64_23060) yjcB 4582046..4582327 (+) 282 WP_001362074.1 YjcB family protein -
  A9K64_RS23065 (A9K64_23065) - 4582598..4583074 (+) 477 WP_001121509.1 hypothetical protein -
  A9K64_RS23070 (A9K64_23070) ssb 4583276..4583812 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  A9K64_RS23075 (A9K64_23075) uvrA 4584067..4586889 (+) 2823 WP_001033156.1 excinuclease ABC subunit UvrA -
  A9K64_RS23080 (A9K64_23080) yjbR 4586924..4587280 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  A9K64_RS23085 (A9K64_23085) yjbQ 4587284..4587700 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  A9K64_RS23090 (A9K64_23090) aphA 4587811..4588524 (-) 714 WP_001226920.1 acid phosphatase AphA -
  A9K64_RS29945 - 4588942..4589146 (+) 205 Protein_4434 hypothetical protein -
  A9K64_RS23100 (A9K64_23100) tyrB 4589648..4590841 (-) 1194 WP_000486960.1 aromatic amino acid transaminase -
  A9K64_RS23105 (A9K64_23105) alr 4591094..4592173 (-) 1080 WP_001147337.1 alanine racemase -
  A9K64_RS23110 (A9K64_23110) dnaB 4592226..4593641 (-) 1416 WP_000918363.1 replicative DNA helicase -
  A9K64_RS23115 (A9K64_23115) qorA 4593724..4594707 (+) 984 WP_000235509.1 quinone oxidoreductase -
  A9K64_RS23120 (A9K64_23120) pspG 4594873..4595115 (-) 243 WP_000891404.1 envelope stress response protein PspG -
  A9K64_RS23125 (A9K64_23125) dusA 4595249..4596286 (-) 1038 WP_001313500.1 tRNA dihydrouridine(20/20a) synthase DusA -
  A9K64_RS23130 (A9K64_23130) - 4596649..4597395 (-) 747 WP_001313499.1 DUF2713 family protein -
  A9K64_RS30095 (A9K64_23135) - 4597386..4597670 (-) 285 WP_001313498.1 hypothetical protein -
  A9K64_RS23140 (A9K64_23140) zur 4597989..4598504 (+) 516 WP_001295691.1 zinc uptake transcriptional repressor Zur -
  A9K64_RS23145 (A9K64_23145) yjbJ 4598546..4598755 (-) 210 WP_001030594.1 CsbD family protein -
  A9K64_RS23150 (A9K64_23150) dinF 4598871..4600196 (-) 1326 WP_023154505.1 MATE family efflux transporter DinF -
  A9K64_RS23155 (A9K64_23155) lexA 4600269..4600877 (-) 609 WP_000646078.1 transcriptional repressor LexA -
  A9K64_RS23160 (A9K64_23160) dgkA 4600987..4601355 (-) 369 WP_000002907.1 diacylglycerol kinase -
  A9K64_RS23165 (A9K64_23165) plsB 4601526..4603949 (+) 2424 WP_064638594.1 glycerol-3-phosphate 1-O-acyltransferase PlsB -
  A9K64_RS23170 (A9K64_23170) ubiA 4604104..4604976 (-) 873 WP_000455227.1 4-hydroxybenzoate octaprenyltransferase -
  A9K64_RS23175 (A9K64_23175) ubiC 4604989..4605486 (-) 498 WP_001308201.1 chorismate lyase -
  A9K64_RS23180 (A9K64_23180) - 4605709..4607288 (-) 1580 Protein_4451 SopA family protein -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=185013 A9K64_RS23070 WP_000168305.1 4583276..4583812(-) (ssb) [Escherichia coli strain S51]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=185013 A9K64_RS23070 WP_000168305.1 4583276..4583812(-) (ssb) [Escherichia coli strain S51]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCTGGTCAGGATCGCTACACCACAGAAGTTGTGGTGAACGTTGG
CGGCACTATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489

Multiple sequence alignment