Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   EC780_RS07290 Genome accession   NZ_CP020106
Coordinates   1365636..1366151 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain 13E0780     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1360636..1371151
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EC780_RS07240 (EC780_07240) csrA 1361083..1361268 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  EC780_RS07275 (EC780_07275) yqaB 1362866..1363432 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  EC780_RS07280 (EC780_07280) yqaA 1363429..1363857 (+) 429 WP_001287457.1 YqaA family protein -
  EC780_RS07285 (EC780_07285) gshA 1363930..1365486 (+) 1557 WP_000611782.1 glutamate--cysteine ligase -
  EC780_RS07290 (EC780_07290) luxS 1365636..1366151 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  EC780_RS07295 (EC780_07295) emrB 1366215..1367753 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  EC780_RS07300 (EC780_07300) emrA 1367770..1368942 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  EC780_RS07305 (EC780_07305) emrR 1369069..1369599 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  EC780_RS07310 (EC780_07310) ygaH 1369690..1370025 (-) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  EC780_RS07315 (EC780_07315) ygaZ 1370015..1370752 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=184967 EC780_RS07290 WP_001130211.1 1365636..1366151(+) (luxS) [Escherichia coli strain 13E0780]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=184967 EC780_RS07290 WP_001130211.1 1365636..1366151(+) (luxS) [Escherichia coli strain 13E0780]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAATGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment