Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   A9D66_RS16275 Genome accession   NZ_CP015972
Coordinates   3585403..3585939 (-) Length   178 a.a.
NCBI ID   WP_003488165.1    Uniprot ID   A0AAX0I001
Organism   Xanthomonas citri pv. glycines str. 12-2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3580403..3590939
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A9D66_RS16260 (A9D66_15570) paoA 3581264..3581914 (-) 651 WP_016849460.1 aldehyde dehydrogenase iron-sulfur subunit PaoA -
  A9D66_RS16265 (A9D66_15575) - 3582338..3583345 (-) 1008 WP_016849461.1 NAD(P)-dependent alcohol dehydrogenase -
  A9D66_RS16270 (A9D66_15580) - 3583570..3585117 (+) 1548 WP_016849462.1 sensor domain-containing diguanylate cyclase -
  A9D66_RS16275 (A9D66_15585) ssb 3585403..3585939 (-) 537 WP_003488165.1 single-stranded DNA-binding protein Machinery gene
  A9D66_RS16280 (A9D66_15590) - 3586213..3587211 (+) 999 WP_011348098.1 polyprenyl synthetase family protein -
  A9D66_RS16285 (A9D66_15595) - 3587411..3588211 (-) 801 WP_026007050.1 dienelactone hydrolase family protein -
  A9D66_RS16290 (A9D66_15600) murD 3588556..3589962 (-) 1407 WP_016850261.1 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 19011.86 Da        Isoelectric Point: 5.3095

>NTDB_id=184833 A9D66_RS16275 WP_003488165.1 3585403..3585939(-) (ssb) [Xanthomonas citri pv. glycines str. 12-2]
MARGINKVILVGNLGNDPDTKYTQAGMAITRVSLATTSMRKDRDGNNQERTEWHRVVFFGKLGEIAGEYLRKGSQVYVEG
ELRYDKYTGQDGVEKYSTDIVANEMQMLGGRGEGGGGGMGSDRPQRSAPRQQGGGGGQGGGGYGGGGGGQDYAPRRQQPA
QQQSAPPMDDFADDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=184833 A9D66_RS16275 WP_003488165.1 3585403..3585939(-) (ssb) [Xanthomonas citri pv. glycines str. 12-2]
ATGGCCCGCGGCATCAACAAAGTCATCCTCGTCGGCAACCTCGGCAACGATCCCGACACCAAGTACACCCAGGCCGGCAT
GGCAATCACGCGCGTGAGCCTGGCCACCACCAGCATGCGCAAGGACCGCGACGGCAATAACCAGGAACGTACCGAGTGGC
ACCGCGTGGTGTTCTTCGGAAAGCTGGGCGAAATCGCCGGCGAGTACCTGCGCAAGGGCTCGCAGGTGTATGTCGAAGGC
GAACTGCGCTACGACAAGTACACCGGCCAGGACGGCGTTGAAAAGTACAGCACCGACATCGTCGCCAACGAGATGCAGAT
GCTCGGCGGCCGTGGCGAAGGCGGCGGTGGTGGGATGGGCAGCGATCGCCCGCAGCGTTCGGCGCCGCGTCAGCAGGGCG
GCGGTGGCGGGCAGGGTGGTGGCGGATATGGCGGCGGTGGCGGTGGTCAGGACTACGCGCCGCGTCGTCAGCAGCCGGCC
CAGCAGCAGTCGGCGCCGCCAATGGACGATTTCGCAGACGACGATATCCCGTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

44.388

100

0.489
  ssb Glaesserella parasuis strain SC1401

46.409

100

0.472
  ssb Neisseria meningitidis MC58

44.751

100

0.455
  ssb Neisseria gonorrhoeae MS11

44.751

100

0.455

Multiple sequence alignment