Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   B4X03_RS09160 Genome accession   NZ_CP020085
Coordinates   1914668..1915672 (-) Length   334 a.a.
NCBI ID   WP_021113735.1    Uniprot ID   -
Organism   Glaesserella parasuis strain CL120103     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1909668..1920672
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B4X03_RS09145 oppC 1910901..1911821 (-) 921 WP_005711630.1 oligopeptide ABC transporter permease OppC -
  B4X03_RS09150 oppB 1911832..1912755 (-) 924 WP_005711628.1 oligopeptide ABC transporter permease OppB -
  B4X03_RS09155 - 1912850..1914487 (-) 1638 WP_021113736.1 ABC transporter substrate-binding protein -
  B4X03_RS09160 ruvB 1914668..1915672 (-) 1005 WP_021113735.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  B4X03_RS09165 - 1915749..1917683 (-) 1935 WP_021113734.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  B4X03_RS09170 - 1917698..1920169 (-) 2472 WP_026916391.1 class I adenylate cyclase -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 36924.27 Da        Isoelectric Point: 4.8644

>NTDB_id=184686 B4X03_RS09160 WP_021113735.1 1914668..1915672(-) (ruvB) [Glaesserella parasuis strain CL120103]
MIEADRIISASAKKEDETIDRAIRPKMLADYVGQPSVREQMEIFIKAAKLRNDALDHLLIFGPPGLGKTTLANIIANEMG
VNIRTTSGPVLEKAGDLAAILTNLEPYDVLFIDEIHRLSPAIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGA
TTRAGSLTSPLRDRFGIVQRLEFYSVEDLTSIVSRSANCLNLNLSPEGAYEIARRSRGTPRIANRLLRRVRDFADVRNNG
IISSDIAKQALTMLDVDSEGFDFMDRKLLSAVIERFDGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRIA
TSRTYSHLGLVKSE

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=184686 B4X03_RS09160 WP_021113735.1 1914668..1915672(-) (ruvB) [Glaesserella parasuis strain CL120103]
ATGATTGAAGCTGACAGAATTATCAGTGCCTCAGCAAAGAAAGAGGACGAAACTATCGATCGTGCAATTCGCCCTAAAAT
GCTTGCCGATTATGTCGGACAGCCGTCAGTGCGAGAGCAGATGGAAATTTTTATCAAGGCGGCTAAATTACGCAATGATG
CTTTAGATCACCTGTTGATCTTTGGGCCACCAGGCTTAGGTAAAACGACACTGGCGAACATTATTGCAAACGAAATGGGC
GTGAATATCCGCACGACATCAGGGCCAGTGCTGGAAAAAGCAGGGGATCTTGCCGCAATTCTGACAAACCTCGAACCCTA
CGATGTGCTTTTTATTGACGAAATTCACCGCTTGTCGCCAGCCATTGAGGAAGTGTTGTACCCTGCAATGGAAGATTATC
AGTTGGATATTATGATTGGTGAAGGCCCAGCGGCACGTTCAATTAAACTCGATCTTCCCCCATTTACCCTCGTTGGGGCA
ACAACACGAGCAGGTTCTTTAACGTCGCCTTTGCGTGACCGCTTCGGCATTGTTCAACGCCTTGAATTTTATTCCGTTGA
AGATCTTACCTCCATTGTTAGCCGTAGTGCAAACTGTTTAAATTTAAATTTATCCCCTGAAGGAGCCTATGAAATCGCAC
GCCGTTCACGCGGAACGCCTCGAATTGCCAACCGCTTGTTACGCCGAGTACGAGATTTTGCAGACGTACGAAACAACGGC
ATTATTTCCTCTGACATTGCAAAACAAGCATTAACGATGTTAGATGTCGATTCCGAAGGCTTTGATTTTATGGATAGAAA
ATTACTTTCTGCTGTAATTGAGCGATTTGATGGCGGACCCGTTGGATTAGATAACCTTGCAGCCGCCATTGGCGAGGAAC
GGGAAACCATTGAAGATGTGCTAGAGCCTTATTTAATCCAACAAGGCTTTTTGCAACGTACACCAAGAGGGCGAATAGCC
ACATCGAGGACTTATAGTCATTTGGGGTTGGTAAAATCTGAATAG

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(23-181)

RuvB C-terminal winged helix domain (WHD_RuvB)

(259-328)

RuvB AAA lid domain (AAA_lid_4)

(184-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

61.963

97.605

0.605
  ruvB Streptococcus pneumoniae TIGR4

59.574

98.503

0.587
  ruvB Streptococcus pneumoniae R6

59.574

98.503

0.587
  ruvB Streptococcus pneumoniae D39

59.574

98.503

0.587
  ruvB Synechocystis sp. PCC 6803

54.829

96.108

0.527
  ruvB Helicobacter pylori 26695

53.681

97.605

0.524

Multiple sequence alignment