Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   B4X03_RS00685 Genome accession   NZ_CP020085
Coordinates   123236..123910 (+) Length   224 a.a.
NCBI ID   WP_005713163.1    Uniprot ID   -
Organism   Glaesserella parasuis strain CL120103     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 118236..128910
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B4X03_RS00645 rpmG 118874..119044 (-) 171 WP_005624479.1 50S ribosomal protein L33 -
  B4X03_RS00650 rpmB 119056..119292 (-) 237 WP_006251446.1 50S ribosomal protein L28 -
  B4X03_RS00655 radC 119418..120134 (-) 717 WP_021113221.1 RadC family protein Machinery gene
  B4X03_RS00660 coaBC 120304..121506 (+) 1203 WP_075592555.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  B4X03_RS00665 - 121516..121842 (+) 327 WP_005713172.1 hypothetical protein -
  B4X03_RS00670 dut 121868..122323 (+) 456 WP_082259026.1 dUTP diphosphatase -
  B4X03_RS00675 slmA 122332..122937 (+) 606 WP_005713169.1 nucleoid occlusion factor SlmA -
  B4X03_RS00680 - 122945..123169 (+) 225 WP_005713165.1 YheU family protein -
  B4X03_RS00685 crp 123236..123910 (+) 675 WP_005713163.1 cAMP-activated global transcriptional regulator CRP Regulator
  B4X03_RS00690 - 124132..125229 (+) 1098 WP_082259027.1 ISAs1 family transposase -
  B4X03_RS11185 - 125680..125817 (+) 138 WP_021119358.1 hypothetical protein -
  B4X03_RS00700 pyrD 125970..126977 (-) 1008 WP_021119357.1 quinone-dependent dihydroorotate dehydrogenase -
  B4X03_RS00705 - 127346..128296 (-) 951 WP_005713153.1 ribose-phosphate pyrophosphokinase -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 25192.17 Da        Isoelectric Point: 6.9079

>NTDB_id=184646 B4X03_RS00685 WP_005713163.1 123236..123910(+) (crp) [Glaesserella parasuis strain CL120103]
MQDVSISTAQLEDVSPLPSIHDPAVEWFLTHCHIHRYPAKYTLIHAGEDAESLFYIVSGAVSVFIKDEEGKEMLLTNLGQ
GEFVGEISLFEEKAQPRTAWVRTKGNCEIAEISYKKFKQLVHLNPDILMYLSAQMARRLRMTSRQVSNLAFLDVTGRIAQ
TLMNLAKMPDAMTHPQGMQIKITRQEIGQMVGCSRETVGRILKMLEDEGLISAHGKTIVVYGTR

Nucleotide


Download         Length: 675 bp        

>NTDB_id=184646 B4X03_RS00685 WP_005713163.1 123236..123910(+) (crp) [Glaesserella parasuis strain CL120103]
ATGCAAGATGTTTCAATCTCAACCGCACAGCTTGAAGATGTCAGCCCATTACCATCCATTCACGATCCTGCGGTGGAATG
GTTTTTAACTCACTGTCATATTCATCGTTATCCAGCAAAATATACTTTAATTCACGCAGGTGAAGATGCTGAATCACTGT
TTTATATTGTCAGCGGAGCTGTGTCTGTCTTTATCAAGGATGAAGAAGGCAAGGAGATGTTATTAACCAATTTAGGCCAA
GGCGAATTTGTCGGTGAAATCAGCCTTTTTGAAGAAAAGGCTCAGCCTCGCACTGCTTGGGTAAGAACTAAAGGTAACTG
TGAAATTGCTGAAATTTCTTATAAAAAATTCAAGCAATTAGTGCATCTTAATCCAGATATTTTGATGTATTTATCCGCAC
AGATGGCTCGCCGTTTACGAATGACATCAAGGCAGGTTAGCAACCTAGCATTTCTTGATGTAACAGGTCGTATTGCTCAA
ACATTGATGAATTTAGCTAAAATGCCTGATGCGATGACTCACCCTCAGGGTATGCAGATTAAAATTACTCGCCAAGAAAT
TGGTCAAATGGTTGGTTGCTCACGAGAAACTGTAGGTCGTATTTTGAAAATGCTTGAGGATGAAGGGTTAATTTCTGCAC
ATGGTAAAACTATCGTGGTGTATGGGACAAGATAA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(35-121)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(156-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

75.862

90.625

0.687
  crp Haemophilus influenzae Rd KW20

73.399

90.625

0.665
  crp Acinetobacter baumannii D1279779

48

89.286

0.429

Multiple sequence alignment