Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   B4X03_RS00655 Genome accession   NZ_CP020085
Coordinates   119418..120134 (-) Length   238 a.a.
NCBI ID   WP_021113221.1    Uniprot ID   -
Organism   Glaesserella parasuis strain CL120103     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 114418..125134
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B4X03_RS00630 ciaR 115492..116163 (-) 672 WP_021111236.1 response regulator Regulator
  B4X03_RS00635 - 116224..116589 (-) 366 WP_021114421.1 YgiW/YdeI family stress tolerance OB fold protein -
  B4X03_RS00640 - 116758..118719 (-) 1962 WP_043896628.1 TonB-dependent receptor domain-containing protein -
  B4X03_RS00645 rpmG 118874..119044 (-) 171 WP_005624479.1 50S ribosomal protein L33 -
  B4X03_RS00650 rpmB 119056..119292 (-) 237 WP_006251446.1 50S ribosomal protein L28 -
  B4X03_RS00655 radC 119418..120134 (-) 717 WP_021113221.1 RadC family protein Machinery gene
  B4X03_RS00660 coaBC 120304..121506 (+) 1203 WP_075592555.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  B4X03_RS00665 - 121516..121842 (+) 327 WP_005713172.1 hypothetical protein -
  B4X03_RS00670 dut 121868..122323 (+) 456 WP_082259026.1 dUTP diphosphatase -
  B4X03_RS00675 slmA 122332..122937 (+) 606 WP_005713169.1 nucleoid occlusion factor SlmA -
  B4X03_RS00680 - 122945..123169 (+) 225 WP_005713165.1 YheU family protein -
  B4X03_RS00685 crp 123236..123910 (+) 675 WP_005713163.1 cAMP-activated global transcriptional regulator CRP Regulator

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27291.45 Da        Isoelectric Point: 4.7438

>NTDB_id=184645 B4X03_RS00655 WP_021113221.1 119418..120134(-) (radC) [Glaesserella parasuis strain CL120103]
MNESSYELMPREKLLKFGAEALSDAELLAIFLRTGIKGIPVMDLSESVLTAFGSLRGLLSATLEDFCKIKGLGQIQYIQL
QATKEMTKRYLSQQMKVNEMVDSPYLAVMYFQSELESWEREVFMVIFLDNQNRLIKTEKMFYGTINQASVHPREIIKEAL
KCNAAAILVAHNHPSGNCNPSEADRFLTRKIEMACDLVDIRFVDHIIVGKGDYFSFEEEKFEQENYEFSPCLDELKQV

Nucleotide


Download         Length: 717 bp        

>NTDB_id=184645 B4X03_RS00655 WP_021113221.1 119418..120134(-) (radC) [Glaesserella parasuis strain CL120103]
ATGAATGAAAGTTCTTATGAATTAATGCCAAGAGAAAAATTACTAAAATTTGGGGCAGAAGCTTTAAGTGATGCGGAGCT
ATTGGCAATCTTTTTACGCACAGGAATTAAAGGGATACCTGTAATGGATCTATCAGAAAGTGTATTAACTGCCTTTGGCT
CATTACGAGGATTGCTGTCAGCGACATTAGAGGATTTTTGTAAAATCAAAGGGTTAGGGCAAATTCAGTACATTCAACTT
CAGGCTACGAAAGAGATGACGAAACGCTATCTATCCCAACAAATGAAAGTCAATGAAATGGTAGATAGTCCCTATTTGGC
GGTAATGTATTTTCAATCGGAATTAGAATCTTGGGAGCGAGAGGTGTTTATGGTGATCTTTTTAGATAACCAAAATAGGC
TAATTAAAACAGAAAAAATGTTTTATGGCACGATCAACCAAGCATCTGTTCATCCTCGTGAAATCATCAAAGAGGCCTTA
AAGTGTAATGCTGCTGCCATTTTAGTTGCTCATAACCACCCATCTGGCAATTGTAATCCAAGTGAGGCTGATCGCTTTCT
AACTCGAAAAATCGAAATGGCGTGCGATTTAGTCGATATTCGCTTTGTTGATCATATTATTGTTGGCAAAGGTGACTATT
TTTCGTTCGAAGAAGAGAAGTTTGAACAGGAAAATTACGAATTTTCCCCTTGTTTAGATGAGCTAAAGCAAGTATAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-220)

UPF0758 N-terminal (UPF0758_N)

(8-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

61.111

90.756

0.555

Multiple sequence alignment