Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaR   Type   Regulator
Locus tag   B4X03_RS00630 Genome accession   NZ_CP020085
Coordinates   115492..116163 (-) Length   223 a.a.
NCBI ID   WP_021111236.1    Uniprot ID   -
Organism   Glaesserella parasuis strain CL120103     
Function   repress competence development; post-transcriptional repression of CSP production (predicted from homology)   
Competence regulation

Genomic Context

Location: 110492..121163
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B4X03_RS00610 groL 111674..113317 (-) 1644 WP_042906609.1 chaperonin GroEL -
  B4X03_RS00615 - 113428..113715 (-) 288 WP_005713186.1 co-chaperone GroES -
  B4X03_RS11930 - 113921..113983 (-) 63 Protein_118 RNA-guided endonuclease TnpB family protein -
  B4X03_RS00625 qseC 114105..115505 (-) 1401 WP_082259025.1 quorum sensing histidine kinase QseC -
  B4X03_RS00630 ciaR 115492..116163 (-) 672 WP_021111236.1 response regulator Regulator
  B4X03_RS00635 - 116224..116589 (-) 366 WP_021114421.1 YgiW/YdeI family stress tolerance OB fold protein -
  B4X03_RS00640 - 116758..118719 (-) 1962 WP_043896628.1 TonB-dependent receptor domain-containing protein -
  B4X03_RS00645 rpmG 118874..119044 (-) 171 WP_005624479.1 50S ribosomal protein L33 -
  B4X03_RS00650 rpmB 119056..119292 (-) 237 WP_006251446.1 50S ribosomal protein L28 -
  B4X03_RS00655 radC 119418..120134 (-) 717 WP_021113221.1 RadC family protein Machinery gene

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 25454.15 Da        Isoelectric Point: 6.0355

>NTDB_id=184644 B4X03_RS00630 WP_021111236.1 115492..116163(-) (ciaR) [Glaesserella parasuis strain CL120103]
MRILLVEDDPLIGEGLKLGLSKSGFSVDWFADGRSGLEALSSAPYDAVVLDLTLPKMDGLEVLQSWRRANQDVPVLILTA
RDTLDERITGLQRGADDYLCKPFALAEVVARLQALIRRRYGHTNPVIEHSLVKFDPNQRKVFLREQEVTLTTREYNLLEL
FMHNKERVLTRSFIEEKLYTWDDEVSSNALEVHIYNLRQKLGKQFIRTVHGVGYALGKNDEVA

Nucleotide


Download         Length: 672 bp        

>NTDB_id=184644 B4X03_RS00630 WP_021111236.1 115492..116163(-) (ciaR) [Glaesserella parasuis strain CL120103]
ATGCGTATTTTATTAGTTGAAGACGATCCGTTGATCGGTGAAGGGCTAAAACTTGGTTTGAGTAAATCTGGCTTTAGTGT
GGACTGGTTTGCCGATGGCAGATCTGGCTTAGAGGCGTTAAGTTCTGCTCCTTATGATGCCGTTGTTCTCGATCTCACCT
TGCCTAAAATGGACGGACTTGAGGTGTTACAAAGTTGGCGACGGGCAAATCAAGATGTGCCAGTGCTAATTTTGACTGCA
AGAGATACCCTTGATGAACGTATCACTGGGCTACAACGTGGTGCAGATGATTATCTCTGTAAACCTTTTGCTCTCGCAGA
AGTTGTAGCTCGTTTACAAGCTTTGATCCGCCGTCGTTATGGGCATACCAACCCCGTGATTGAACATAGTTTAGTTAAAT
TCGATCCAAACCAACGCAAAGTGTTTCTTCGGGAGCAAGAAGTCACCCTAACCACACGAGAGTACAATTTACTTGAGCTA
TTTATGCACAATAAAGAGCGTGTTCTCACCCGTTCTTTTATTGAAGAGAAACTCTATACTTGGGACGATGAAGTCAGTAG
CAACGCCCTTGAAGTCCATATCTACAATTTACGCCAAAAACTCGGAAAACAGTTTATTCGTACCGTACACGGTGTTGGCT
ATGCCTTAGGAAAAAACGATGAAGTTGCTTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(3-112)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(146-216)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaR Streptococcus pneumoniae Rx1

35.683

100

0.363
  ciaR Streptococcus pneumoniae D39

35.683

100

0.363
  ciaR Streptococcus pneumoniae R6

35.683

100

0.363
  ciaR Streptococcus pneumoniae TIGR4

35.683

100

0.363

Multiple sequence alignment