Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   Vc3S01_RS11990 Genome accession   NZ_CP020076
Coordinates   2472518..2473522 (-) Length   334 a.a.
NCBI ID   WP_005426235.1    Uniprot ID   A7N1I0
Organism   Vibrio campbellii strain 20130629003S01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2467518..2478522
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Vc3S01_RS11960 (Vc3S01_2190) tolQ 2467622..2468320 (-) 699 WP_005426224.1 protein TolQ -
  Vc3S01_RS11965 (Vc3S01_2191) ybgC 2468310..2468729 (-) 420 WP_005426200.1 tol-pal system-associated acyl-CoA thioesterase -
  Vc3S01_RS11970 (Vc3S01_2192) ybgE 2468901..2469203 (-) 303 WP_012127446.1 cyd operon protein YbgE -
  Vc3S01_RS11975 cydX 2469196..2469303 (-) 108 WP_000270284.1 cytochrome bd-I oxidase subunit CydX -
  Vc3S01_RS11980 (Vc3S01_2193) cydB 2469316..2470452 (-) 1137 WP_038889166.1 cytochrome d ubiquinol oxidase subunit II -
  Vc3S01_RS11985 (Vc3S01_2194) cydA 2470470..2472056 (-) 1587 WP_038889167.1 cytochrome ubiquinol oxidase subunit I -
  Vc3S01_RS11990 (Vc3S01_2195) ruvB 2472518..2473522 (-) 1005 WP_005426235.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  Vc3S01_RS11995 (Vc3S01_2196) ruvA 2473544..2474158 (-) 615 WP_043882971.1 Holliday junction branch migration protein RuvA -
  Vc3S01_RS12000 (Vc3S01_2197) - 2474237..2475688 (-) 1452 WP_077200941.1 methyl-accepting chemotaxis protein -
  Vc3S01_RS12005 (Vc3S01_2198) ruvC 2475811..2476332 (-) 522 WP_005426231.1 crossover junction endodeoxyribonuclease RuvC -
  Vc3S01_RS12010 (Vc3S01_2199) aspS 2476433..2478211 (-) 1779 WP_005426152.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 37277.63 Da        Isoelectric Point: 4.6703

>NTDB_id=184513 Vc3S01_RS11990 WP_005426235.1 2472518..2473522(-) (ruvB) [Vibrio campbellii strain 20130629003S01]
MIEADRLIAPENPSFREEDVIDRAIRPKKLADYQGQDHVRDQMEIFIKAAQLRNEALDHLLIFGPPGLGKTTLANIVANE
MEVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSPMVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLI
GATTRAGSLTSPLRDRFGITQRLEYYKVKDLQDIVQRSADCLGLSMESEGALEVARRARGTPRIANRLLRRVRDYAEVKG
NGHICADTADKALNMLDVDAEGFDYMDRKLLLAIMEKFGGGPVGLDNMAAAIGEEKDTIEDVLEPYLIQQGYLQRTPRGR
IATDRAYLHFGIEK

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=184513 Vc3S01_RS11990 WP_005426235.1 2472518..2473522(-) (ruvB) [Vibrio campbellii strain 20130629003S01]
ATGATTGAAGCCGATCGTTTAATCGCGCCAGAAAATCCTTCGTTTCGTGAAGAAGACGTCATCGACCGTGCGATTCGTCC
TAAGAAGCTGGCGGATTACCAAGGTCAGGATCACGTGCGTGATCAGATGGAGATTTTCATCAAAGCCGCTCAATTACGAA
ATGAAGCGCTCGACCACCTTTTGATTTTTGGTCCTCCAGGTTTGGGTAAAACCACGCTTGCGAACATCGTTGCCAATGAG
ATGGAAGTGAACATTCGTACCACTTCTGGCCCTGTACTCGAGAAAGCAGGGGACTTAGCGGCGCTGTTGACCAATTTAGA
AGAAAACGATGTGTTGTTCATTGATGAGATCCACCGCTTAAGCCCGATGGTTGAAGAGGTGTTGTATCCAGCGATGGAAG
ACTACCAGTTAGACATTATGATTGGTGAAGGTCCGGCGGCACGCTCTATCAAAATTGATTTACCACCTTTCACTTTGATC
GGTGCAACGACGCGTGCAGGCTCTTTGACATCACCATTGCGTGACCGTTTTGGTATTACTCAGCGTCTTGAATACTACAA
AGTGAAAGACCTGCAAGATATCGTTCAGCGCAGTGCTGACTGTTTGGGTTTGTCTATGGAGTCGGAAGGGGCGTTAGAAG
TTGCTCGCCGTGCTCGTGGCACGCCACGTATTGCTAACCGATTGCTACGCCGAGTTCGTGACTATGCGGAAGTAAAAGGC
AACGGTCATATTTGTGCTGATACCGCAGACAAAGCATTGAACATGCTTGATGTCGATGCCGAAGGTTTTGATTATATGGA
CCGTAAGCTGCTGTTAGCGATTATGGAGAAGTTTGGCGGTGGGCCTGTTGGTTTGGACAACATGGCTGCGGCGATCGGTG
AAGAGAAAGACACCATCGAAGACGTTCTTGAACCATATCTAATCCAACAAGGTTATTTGCAACGCACTCCGCGTGGTAGA
ATTGCCACCGATCGTGCTTATTTGCATTTCGGAATTGAAAAGTAA

Domains

Predicted by InterProScan.

RuvB C-terminal winged helix domain (WHD_RuvB)

(261-330)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(25-183)

RuvB AAA lid domain (AAA_lid_4)

(186-259)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7N1I0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

60.486

98.503

0.596
  ruvB Streptococcus pneumoniae TIGR4

58.824

96.707

0.569
  ruvB Streptococcus pneumoniae R6

58.824

96.707

0.569
  ruvB Streptococcus pneumoniae D39

58.824

96.707

0.569
  ruvB Synechocystis sp. PCC 6803

53.681

97.605

0.524
  ruvB Helicobacter pylori 26695

54.276

91.018

0.494