Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   B4602_RS08430 Genome accession   NZ_CP020020
Coordinates   1675706..1676392 (-) Length   228 a.a.
NCBI ID   WP_000692886.1    Uniprot ID   -
Organism   Staphylococcus aureus strain ATCC 6538     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1670706..1681392
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B4602_RS08385 rpmA 1671350..1671634 (-) 285 WP_000916187.1 50S ribosomal protein L27 -
  B4602_RS08390 - 1671646..1671966 (-) 321 WP_042727697.1 ribosomal-processing cysteine protease Prp -
  B4602_RS08395 rplU 1671972..1672280 (-) 309 WP_000457386.1 50S ribosomal protein L21 -
  B4602_RS08400 mreD 1672642..1673172 (-) 531 WP_001259925.1 rod shape-determining protein MreD -
  B4602_RS08405 mreC 1673172..1674014 (-) 843 WP_000911041.1 rod shape-determining protein MreC -
  B4602_RS08410 - 1674214..1674333 (-) 120 WP_000840601.1 hypothetical protein -
  B4602_RS08415 - 1674407..1674880 (-) 474 WP_001236734.1 DUF4930 family protein -
  B4602_RS08420 - 1675040..1675237 (+) 198 WP_000025835.1 hypothetical protein -
  B4602_RS08425 - 1675354..1675638 (-) 285 WP_000171859.1 hypothetical protein -
  B4602_RS08430 ysxA/radC 1675706..1676392 (-) 687 WP_000692886.1 DNA repair protein RadC Machinery gene
  B4602_RS08435 - 1676389..1677096 (-) 708 Protein_1589 prepilin peptidase -
  B4602_RS08445 - 1677366..1678637 (-) 1272 WP_001108346.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  B4602_RS08450 - 1678650..1681280 (-) 2631 WP_042727698.1 valine--tRNA ligase -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25311.24 Da        Isoelectric Point: 6.7572

>NTDB_id=183655 B4602_RS08430 WP_000692886.1 1675706..1676392(-) (ysxA/radC) [Staphylococcus aureus strain ATCC 6538]
MKIKEMVTSEMPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLIQVKGIGLQKAI
TLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILLLNSKNVVIKETCVFKGTLNSSIVHPREIFSI
AVRENANAIIAVHNHPSGDVTPSQEDIITTMRLKECGLILGIDLLDHIIIGDNRFTSLVEAGYFDEND

Nucleotide


Download         Length: 687 bp        

>NTDB_id=183655 B4602_RS08430 WP_000692886.1 1675706..1676392(-) (ysxA/radC) [Staphylococcus aureus strain ATCC 6538]
TTGAAAATTAAAGAAATGGTAACTTCAGAAATGCCAAGAGAACGTTTGTTAAGCCATGGTGCAAAAAGTCTTTCGAATAC
AGAATTATTAGCTATATTAATTAACACCGGAAGAAAAGGATTCTCGAGCATAGACATTAGTAATGAACTGCTTAAATCTG
CTTCGAATCTGAATGAATTGAAAAAATCTTCAATTAACGATTTGATACAAGTTAAAGGGATTGGATTACAAAAAGCAATT
ACTTTAAAAGCAGCATTTGAGCTAGGGGAAAGGATGGGGAGAAGAGCTGAAAATAATCGTATAAAAATAACGCAACCAAG
TGATGTTGCTGATTATATGATTCCAACAATGAAAGATTTAACACAAGAACATTTTGTCATTTTATTGTTAAATTCAAAAA
ATGTAGTGATTAAAGAAACCTGTGTTTTTAAAGGTACATTAAATAGTTCGATTGTACATCCACGTGAAATTTTTAGTATT
GCGGTGAGAGAAAATGCCAATGCAATTATCGCAGTTCATAATCATCCATCCGGTGATGTAACGCCCTCACAAGAAGATAT
CATAACAACAATGAGGTTGAAGGAGTGTGGTTTGATTTTAGGGATAGATTTGTTGGATCATATTATAATCGGTGATAATA
GATTTACCAGTCTTGTAGAAGCGGGTTACTTTGATGAAAATGATTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-222)

UPF0758 N-terminal (UPF0758_N)

(3-80)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

52.679

98.246

0.518
  radC Streptococcus pneumoniae TIGR4

41.038

92.982

0.382
  radC Streptococcus gordonii str. Challis substr. CH1

39.908

95.614

0.382
  radC Streptococcus pneumoniae R6

40.566

92.982

0.377
  radC Streptococcus pneumoniae D39

40.566

92.982

0.377

Multiple sequence alignment