Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | LLJM4_RS11870 | Genome accession | NZ_CP015909 |
| Coordinates | 2312405..2312905 (-) | Length | 166 a.a. |
| NCBI ID | WP_011677241.1 | Uniprot ID | A0A0M2ZSZ2 |
| Organism | Lactococcus cremoris strain JM4 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 2307405..2317905
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LLJM4_RS11845 (LLJM4_2298) | gnd | 2308530..2309435 (-) | 906 | WP_162494692.1 | phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) | - |
| LLJM4_RS11850 (LLJM4_2299) | - | 2309804..2310652 (+) | 849 | WP_011677238.1 | MurR/RpiR family transcriptional regulator | - |
| LLJM4_RS11855 (LLJM4_2300) | - | 2310691..2310999 (+) | 309 | WP_011836103.1 | DUF960 domain-containing protein | - |
| LLJM4_RS11860 (LLJM4_2301) | - | 2311072..2311857 (-) | 786 | WP_021164832.1 | metallophosphoesterase | - |
| LLJM4_RS11865 (LLJM4_2302) | rpsR | 2311988..2312233 (-) | 246 | WP_003131952.1 | 30S ribosomal protein S18 | - |
| LLJM4_RS11870 (LLJM4_2303) | ssb | 2312405..2312905 (-) | 501 | WP_011677241.1 | single-stranded DNA-binding protein | Machinery gene |
| LLJM4_RS11875 (LLJM4_2304) | rpsF | 2312935..2313228 (-) | 294 | WP_011677242.1 | 30S ribosomal protein S6 | - |
| LLJM4_RS11880 (LLJM4_2305) | - | 2313422..2314069 (-) | 648 | Protein_2311 | undecaprenyl-diphosphate phosphatase | - |
| LLJM4_RS11885 (LLJM4_04515) | - | 2314172..2315119 (+) | 948 | WP_003130410.1 | IS30 family transposase | - |
| LLJM4_RS11890 (LLJM4_04520) | - | 2315120..2315356 (-) | 237 | Protein_2313 | undecaprenyl-diphosphate phosphatase | - |
| LLJM4_RS11895 (LLJM4_2306) | - | 2315878..2317344 (+) | 1467 | WP_021164830.1 | amino acid permease | - |
Sequence
Protein
Download Length: 166 a.a. Molecular weight: 18233.05 Da Isoelectric Point: 5.2166
>NTDB_id=183439 LLJM4_RS11870 WP_011677241.1 2312405..2312905(-) (ssb) [Lactococcus cremoris strain JM4]
MINNVVLVGRITRDPELRYTPQNQAVATFSLAVNRQFKNANGEREADFINCVIWRQQAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADSFQMLESRSARDGMGGGASAGSYSAPSQSTNNTPRPQTNNNSATPNFGRDADPFGSSPMEIS
DDDLPF
MINNVVLVGRITRDPELRYTPQNQAVATFSLAVNRQFKNANGEREADFINCVIWRQQAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADSFQMLESRSARDGMGGGASAGSYSAPSQSTNNTPRPQTNNNSATPNFGRDADPFGSSPMEIS
DDDLPF
Nucleotide
Download Length: 501 bp
>NTDB_id=183439 LLJM4_RS11870 WP_011677241.1 2312405..2312905(-) (ssb) [Lactococcus cremoris strain JM4]
ATGATTAACAATGTTGTATTAGTGGGACGCATTACTCGCGATCCTGAACTTCGTTACACCCCTCAAAATCAAGCTGTTGC
TACTTTTTCATTGGCTGTAAATCGTCAATTTAAAAATGCTAACGGTGAACGTGAGGCTGATTTCATTAACTGCGTTATTT
GGCGCCAACAAGCTGAAAATTTGGCAAATTGGGCTAAAAAAGGAGCTTTGATCGGTGTAACTGGTCGAATTCAAACACGT
AATTATGAAAATCAACAAGGTCAACGCGTTTATGTGACTGAGGTTGTGGCTGATAGTTTCCAAATGTTGGAAAGTAGATC
TGCTCGCGATGGTATGGGAGGCGGAGCTTCTGCCGGTTCATATTCTGCACCAAGCCAATCTACAAATAATACTCCACGTC
CACAAACGAATAATAATAGTGCAACACCGAATTTCGGTCGTGATGCTGACCCATTTGGTAGCTCACCTATGGAAATCTCG
GATGATGACCTTCCATTCTAA
ATGATTAACAATGTTGTATTAGTGGGACGCATTACTCGCGATCCTGAACTTCGTTACACCCCTCAAAATCAAGCTGTTGC
TACTTTTTCATTGGCTGTAAATCGTCAATTTAAAAATGCTAACGGTGAACGTGAGGCTGATTTCATTAACTGCGTTATTT
GGCGCCAACAAGCTGAAAATTTGGCAAATTGGGCTAAAAAAGGAGCTTTGATCGGTGTAACTGGTCGAATTCAAACACGT
AATTATGAAAATCAACAAGGTCAACGCGTTTATGTGACTGAGGTTGTGGCTGATAGTTTCCAAATGTTGGAAAGTAGATC
TGCTCGCGATGGTATGGGAGGCGGAGCTTCTGCCGGTTCATATTCTGCACCAAGCCAATCTACAAATAATACTCCACGTC
CACAAACGAATAATAATAGTGCAACACCGAATTTCGGTCGTGATGCTGACCCATTTGGTAGCTCACCTATGGAAATCTCG
GATGATGACCTTCCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
59.884 |
100 |
0.62 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
56.395 |
100 |
0.584 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.855 |
0.373 |
| ssb | Glaesserella parasuis strain SC1401 |
33.898 |
100 |
0.361 |