Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   LLJM4_RS03575 Genome accession   NZ_CP015909
Coordinates   709106..710089 (+) Length   327 a.a.
NCBI ID   WP_032950503.1    Uniprot ID   A0A1V0PIB8
Organism   Lactococcus cremoris strain JM4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 704106..715089
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLJM4_RS03550 (LLJM4_1704) - 704172..705008 (-) 837 WP_011676728.1 Cof-type HAD-IIB family hydrolase -
  LLJM4_RS03555 (LLJM4_1703) - 705316..706737 (+) 1422 WP_011676727.1 NCS2 family permease -
  LLJM4_RS03560 (LLJM4_02920) - 706930..707166 (+) 237 WP_250638220.1 alpha/beta hydrolase -
  LLJM4_RS03565 (LLJM4_1702) - 707205..707792 (+) 588 WP_014572239.1 alpha/beta hydrolase -
  LLJM4_RS03570 (LLJM4_1701) - 707946..709031 (+) 1086 WP_081196819.1 YdcF family protein -
  LLJM4_RS03575 (LLJM4_1700) coiA 709106..710089 (+) 984 WP_032950503.1 competence protein CoiA Machinery gene
  LLJM4_RS03580 (LLJM4_1699) pepF 710164..711969 (+) 1806 WP_081196818.1 oligoendopeptidase F Regulator
  LLJM4_RS03585 (LLJM4_1698) - 711972..712655 (+) 684 WP_011676723.1 O-methyltransferase -
  LLJM4_RS03590 (LLJM4_1697) - 712811..713737 (+) 927 WP_134047427.1 peptidyl-prolyl cis-trans isomerase -

Sequence

Protein


Download         Length: 327 a.a.        Molecular weight: 39121.86 Da        Isoelectric Point: 9.7664

>NTDB_id=183408 LLJM4_RS03575 WP_032950503.1 709106..710089(+) (coiA) [Lactococcus cremoris strain JM4]
MLTAIDENNKIINLLELERKELTGKFYCPSCHAELLIKNGQIKVLHFAHKSLKSCNLWLENESEQHLGLKKILYQWFKRT
DKVEIERYLPELNQRPDLLVNDKIAIEIQCSHLSIKRLKERTENYKAHGFKVLWLMGKDLWLAEQVTKLQKNLVYFSENR
GFFYWELDFQRKKLRLKSLIHEDLRGRIICLQEEIPFGKGRLIAHLRLPYLAQKLVKIPTFKDPKLSSFIRQQLYYQSPK
WMKIQEKYYQKGENLLTKKFEGPYIAPLGLNLLESFTDEMTITTFTQIDQNVKLYYENFLINFQRNSLEMLYPPCFYAIM
GKQKKEK

Nucleotide


Download         Length: 984 bp        

>NTDB_id=183408 LLJM4_RS03575 WP_032950503.1 709106..710089(+) (coiA) [Lactococcus cremoris strain JM4]
ATGCTGACAGCAATTGATGAAAATAATAAAATAATAAACTTACTGGAATTAGAACGCAAAGAATTGACCGGGAAATTTTA
TTGTCCTTCTTGTCATGCAGAGCTACTTATTAAAAATGGGCAGATAAAAGTTCTTCATTTTGCCCATAAATCTCTAAAGA
GCTGCAATTTATGGTTGGAAAATGAGTCAGAACAGCATTTAGGTTTGAAAAAAATATTATATCAGTGGTTTAAAAGGACT
GACAAAGTCGAAATTGAACGCTATTTGCCCGAACTTAACCAAAGACCAGATTTATTAGTAAATGACAAAATCGCTATTGA
GATACAATGCTCTCATTTATCTATTAAGCGCCTCAAAGAACGTACAGAAAATTATAAGGCGCATGGCTTTAAAGTGCTTT
GGTTGATGGGAAAGGATTTATGGCTGGCTGAACAGGTGACAAAACTTCAAAAAAATTTAGTTTATTTCTCGGAAAATAGA
GGATTCTTTTATTGGGAGTTAGATTTTCAGAGGAAAAAATTAAGATTAAAATCTCTTATTCATGAGGATTTACGCGGCAG
AATCATTTGCTTACAAGAGGAAATTCCTTTTGGAAAAGGACGACTTATTGCGCATCTACGCTTACCTTATTTGGCGCAAA
AACTGGTGAAAATTCCTACTTTTAAAGATCCTAAACTTTCTAGTTTTATTCGTCAGCAATTATACTATCAATCACCAAAA
TGGATGAAAATTCAAGAAAAATATTATCAAAAAGGAGAAAATTTACTGACGAAAAAATTTGAAGGTCCATACATTGCTCC
ACTAGGTTTAAATTTACTAGAGAGTTTTACTGACGAAATGACGATCACAACTTTTACTCAGATTGATCAAAATGTTAAGC
TTTACTATGAAAATTTTTTAATAAATTTCCAAAGAAATAGCCTTGAAATGCTCTATCCTCCCTGTTTCTATGCTATAATG
GGAAAGCAGAAGAAGGAAAAATAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1V0PIB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Lactococcus lactis subsp. cremoris KW2

97.248

100

0.972
  coiA Streptococcus mitis NCTC 12261

44.444

99.083

0.44
  coiA Streptococcus pneumoniae TIGR4

43.21

99.083

0.428
  coiA Streptococcus pneumoniae Rx1

43.21

99.083

0.428
  coiA Streptococcus pneumoniae D39

43.21

99.083

0.428
  coiA Streptococcus pneumoniae R6

43.21

99.083

0.428

Multiple sequence alignment