Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | LLUC109_RS10900 | Genome accession | NZ_CP015907 |
| Coordinates | 2145103..2145603 (-) | Length | 166 a.a. |
| NCBI ID | WP_011677241.1 | Uniprot ID | A0A0M2ZSZ2 |
| Organism | Lactococcus cremoris strain UC109 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 2140103..2150603
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LLUC109_RS10875 (LLUC109_1819) | gnd | 2141228..2142133 (-) | 906 | WP_162299529.1 | phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) | - |
| LLUC109_RS10880 (LLUC109_1820) | - | 2142502..2143350 (+) | 849 | WP_011677238.1 | MurR/RpiR family transcriptional regulator | - |
| LLUC109_RS10885 (LLUC109_1821) | - | 2143389..2143697 (+) | 309 | WP_011836103.1 | DUF960 domain-containing protein | - |
| LLUC109_RS10890 (LLUC109_1822) | - | 2143770..2144555 (-) | 786 | WP_021164832.1 | metallophosphoesterase | - |
| LLUC109_RS10895 (LLUC109_1823) | rpsR | 2144686..2144931 (-) | 246 | WP_003131952.1 | 30S ribosomal protein S18 | - |
| LLUC109_RS10900 (LLUC109_1824) | ssb | 2145103..2145603 (-) | 501 | WP_011677241.1 | single-stranded DNA-binding protein | Machinery gene |
| LLUC109_RS10905 (LLUC109_1825) | rpsF | 2145633..2145926 (-) | 294 | WP_011677242.1 | 30S ribosomal protein S6 | - |
| LLUC109_RS10910 (LLUC109_1826) | - | 2146120..2146974 (-) | 855 | WP_015082960.1 | undecaprenyl-diphosphate phosphatase | - |
| LLUC109_RS10915 (LLUC109_1827) | - | 2147496..2148962 (+) | 1467 | WP_015082961.1 | amino acid permease | - |
Sequence
Protein
Download Length: 166 a.a. Molecular weight: 18233.05 Da Isoelectric Point: 5.2166
>NTDB_id=183347 LLUC109_RS10900 WP_011677241.1 2145103..2145603(-) (ssb) [Lactococcus cremoris strain UC109]
MINNVVLVGRITRDPELRYTPQNQAVATFSLAVNRQFKNANGEREADFINCVIWRQQAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADSFQMLESRSARDGMGGGASAGSYSAPSQSTNNTPRPQTNNNSATPNFGRDADPFGSSPMEIS
DDDLPF
MINNVVLVGRITRDPELRYTPQNQAVATFSLAVNRQFKNANGEREADFINCVIWRQQAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADSFQMLESRSARDGMGGGASAGSYSAPSQSTNNTPRPQTNNNSATPNFGRDADPFGSSPMEIS
DDDLPF
Nucleotide
Download Length: 501 bp
>NTDB_id=183347 LLUC109_RS10900 WP_011677241.1 2145103..2145603(-) (ssb) [Lactococcus cremoris strain UC109]
ATGATTAACAATGTTGTATTAGTGGGACGCATTACTCGCGATCCTGAACTTCGTTACACCCCTCAAAATCAAGCTGTTGC
TACTTTTTCATTGGCTGTAAATCGTCAATTTAAAAATGCTAACGGTGAACGTGAGGCTGATTTCATTAACTGCGTTATTT
GGCGCCAACAAGCTGAAAATTTGGCAAATTGGGCTAAAAAAGGAGCTTTGATCGGTGTAACTGGTCGAATTCAAACACGT
AATTATGAAAATCAACAAGGTCAACGCGTTTATGTGACTGAGGTTGTGGCTGATAGTTTCCAAATGTTGGAAAGTAGATC
TGCTCGCGATGGTATGGGAGGCGGAGCTTCTGCCGGTTCATATTCTGCACCAAGCCAATCTACAAATAATACTCCACGTC
CACAAACGAATAATAATAGTGCAACACCGAATTTCGGTCGTGATGCTGACCCATTTGGTAGCTCACCTATGGAAATCTCG
GATGATGACCTTCCATTCTAA
ATGATTAACAATGTTGTATTAGTGGGACGCATTACTCGCGATCCTGAACTTCGTTACACCCCTCAAAATCAAGCTGTTGC
TACTTTTTCATTGGCTGTAAATCGTCAATTTAAAAATGCTAACGGTGAACGTGAGGCTGATTTCATTAACTGCGTTATTT
GGCGCCAACAAGCTGAAAATTTGGCAAATTGGGCTAAAAAAGGAGCTTTGATCGGTGTAACTGGTCGAATTCAAACACGT
AATTATGAAAATCAACAAGGTCAACGCGTTTATGTGACTGAGGTTGTGGCTGATAGTTTCCAAATGTTGGAAAGTAGATC
TGCTCGCGATGGTATGGGAGGCGGAGCTTCTGCCGGTTCATATTCTGCACCAAGCCAATCTACAAATAATACTCCACGTC
CACAAACGAATAATAATAGTGCAACACCGAATTTCGGTCGTGATGCTGACCCATTTGGTAGCTCACCTATGGAAATCTCG
GATGATGACCTTCCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
59.884 |
100 |
0.62 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
56.395 |
100 |
0.584 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.855 |
0.373 |
| ssb | Glaesserella parasuis strain SC1401 |
33.898 |
100 |
0.361 |