Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | LLUC77_RS12595 | Genome accession | NZ_CP015906 |
| Coordinates | 2438210..2438710 (-) | Length | 166 a.a. |
| NCBI ID | WP_003131953.1 | Uniprot ID | - |
| Organism | Lactococcus lactis subsp. lactis strain UC77 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 2433210..2443710
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LLUC77_RS12570 (LLUC77_2456) | gnd | 2434281..2435186 (-) | 906 | WP_031297004.1 | phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) | - |
| LLUC77_RS12575 (LLUC77_2457) | - | 2435550..2436398 (+) | 849 | WP_010906370.1 | MurR/RpiR family transcriptional regulator | - |
| LLUC77_RS12580 (LLUC77_2458) | - | 2436436..2436744 (+) | 309 | WP_010906371.1 | DUF960 domain-containing protein | - |
| LLUC77_RS12585 (LLUC77_2459) | - | 2436818..2437591 (-) | 774 | WP_003131951.1 | metallophosphoesterase | - |
| LLUC77_RS12590 (LLUC77_2460) | rpsR | 2437791..2438036 (-) | 246 | WP_003131952.1 | 30S ribosomal protein S18 | - |
| LLUC77_RS12595 (LLUC77_2461) | ssb | 2438210..2438710 (-) | 501 | WP_003131953.1 | single-stranded DNA-binding protein | Machinery gene |
| LLUC77_RS12600 (LLUC77_2462) | rpsF | 2438740..2439033 (-) | 294 | WP_003131954.1 | 30S ribosomal protein S6 | - |
| LLUC77_RS12605 (LLUC77_2463) | - | 2439225..2440079 (-) | 855 | WP_010906372.1 | undecaprenyl-diphosphate phosphatase | - |
| LLUC77_RS12610 (LLUC77_2464) | - | 2440601..2442067 (+) | 1467 | WP_021214997.1 | amino acid permease | - |
Sequence
Protein
Download Length: 166 a.a. Molecular weight: 18304.13 Da Isoelectric Point: 5.2279
>NTDB_id=183298 LLUC77_RS12595 WP_003131953.1 2438210..2438710(-) (ssb) [Lactococcus lactis subsp. lactis strain UC77]
MINNVVLVGRITRDPELRYTPQNQAVATFSLAVNRQFKNANGEREADFINCVIWRQQAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADSFQMLESRSAREGMGGGTSAGSYSAPSQSTNNTPRPQTNNNNATPNFGRDADPFGSSPMEIS
DDDLPF
MINNVVLVGRITRDPELRYTPQNQAVATFSLAVNRQFKNANGEREADFINCVIWRQQAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADSFQMLESRSAREGMGGGTSAGSYSAPSQSTNNTPRPQTNNNNATPNFGRDADPFGSSPMEIS
DDDLPF
Nucleotide
Download Length: 501 bp
>NTDB_id=183298 LLUC77_RS12595 WP_003131953.1 2438210..2438710(-) (ssb) [Lactococcus lactis subsp. lactis strain UC77]
ATGATTAACAATGTTGTATTAGTAGGACGCATTACTCGCGATCCTGAACTTCGATACACCCCTCAAAATCAAGCTGTCGC
AACATTTTCATTGGCTGTAAACCGTCAATTTAAAAATGCGAATGGCGAACGTGAGGCTGATTTCATTAACTGCGTTATTT
GGCGCCAACAAGCTGAGAATTTGGCGAATTGGGCTAAAAAAGGAGCTTTGATTGGGGTAACTGGTCGAATTCAAACACGT
AACTATGAAAATCAACAAGGTCAACGCGTTTATGTGACTGAGGTTGTGGCTGACAGTTTCCAAATGTTGGAAAGTAGATC
TGCTCGTGAAGGTATGGGAGGCGGAACTTCTGCTGGTTCATATTCTGCACCTAGCCAATCTACAAATAATACTCCACGTC
CACAAACGAATAACAATAATGCAACACCGAATTTCGGTCGTGATGCTGATCCGTTTGGTAGCTCACCGATGGAAATTTCG
GATGATGACCTTCCATTCTAA
ATGATTAACAATGTTGTATTAGTAGGACGCATTACTCGCGATCCTGAACTTCGATACACCCCTCAAAATCAAGCTGTCGC
AACATTTTCATTGGCTGTAAACCGTCAATTTAAAAATGCGAATGGCGAACGTGAGGCTGATTTCATTAACTGCGTTATTT
GGCGCCAACAAGCTGAGAATTTGGCGAATTGGGCTAAAAAAGGAGCTTTGATTGGGGTAACTGGTCGAATTCAAACACGT
AACTATGAAAATCAACAAGGTCAACGCGTTTATGTGACTGAGGTTGTGGCTGACAGTTTCCAAATGTTGGAAAGTAGATC
TGCTCGTGAAGGTATGGGAGGCGGAACTTCTGCTGGTTCATATTCTGCACCTAGCCAATCTACAAATAATACTCCACGTC
CACAAACGAATAACAATAATGCAACACCGAATTTCGGTCGTGATGCTGATCCGTTTGGTAGCTCACCGATGGAAATTTCG
GATGATGACCTTCCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
60.465 |
100 |
0.627 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
57.803 |
100 |
0.602 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.855 |
0.373 |
| ssb | Glaesserella parasuis strain SC1401 |
35.028 |
100 |
0.373 |