Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | LLUC11_RS11150 | Genome accession | NZ_CP015904 |
| Coordinates | 2271696..2272196 (-) | Length | 166 a.a. |
| NCBI ID | WP_003131953.1 | Uniprot ID | - |
| Organism | Lactococcus lactis subsp. lactis strain UC11 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 2266696..2277196
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LLUC11_RS11125 (LLUC11_2143) | gnd | 2267758..2268663 (-) | 906 | WP_038603774.1 | phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) | - |
| LLUC11_RS11130 (LLUC11_2144) | - | 2269028..2269876 (+) | 849 | WP_012898662.1 | MurR/RpiR family transcriptional regulator | - |
| LLUC11_RS11135 (LLUC11_2145) | - | 2269914..2270222 (+) | 309 | WP_017865196.1 | DUF960 domain-containing protein | - |
| LLUC11_RS11140 (LLUC11_2146) | - | 2270304..2271077 (-) | 774 | WP_003131951.1 | metallophosphoesterase | - |
| LLUC11_RS11145 (LLUC11_2147) | rpsR | 2271277..2271522 (-) | 246 | WP_003131952.1 | 30S ribosomal protein S18 | - |
| LLUC11_RS11150 (LLUC11_2148) | ssb | 2271696..2272196 (-) | 501 | WP_003131953.1 | single-stranded DNA-binding protein | Machinery gene |
| LLUC11_RS11155 (LLUC11_2149) | rpsF | 2272226..2272519 (-) | 294 | WP_003131954.1 | 30S ribosomal protein S6 | - |
| LLUC11_RS11160 (LLUC11_2150) | - | 2272711..2273565 (-) | 855 | WP_064973724.1 | undecaprenyl-diphosphate phosphatase | - |
| LLUC11_RS11165 (LLUC11_2151) | - | 2274087..2275553 (+) | 1467 | WP_017865200.1 | amino acid permease | - |
Sequence
Protein
Download Length: 166 a.a. Molecular weight: 18304.13 Da Isoelectric Point: 5.2279
>NTDB_id=183202 LLUC11_RS11150 WP_003131953.1 2271696..2272196(-) (ssb) [Lactococcus lactis subsp. lactis strain UC11]
MINNVVLVGRITRDPELRYTPQNQAVATFSLAVNRQFKNANGEREADFINCVIWRQQAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADSFQMLESRSAREGMGGGTSAGSYSAPSQSTNNTPRPQTNNNNATPNFGRDADPFGSSPMEIS
DDDLPF
MINNVVLVGRITRDPELRYTPQNQAVATFSLAVNRQFKNANGEREADFINCVIWRQQAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADSFQMLESRSAREGMGGGTSAGSYSAPSQSTNNTPRPQTNNNNATPNFGRDADPFGSSPMEIS
DDDLPF
Nucleotide
Download Length: 501 bp
>NTDB_id=183202 LLUC11_RS11150 WP_003131953.1 2271696..2272196(-) (ssb) [Lactococcus lactis subsp. lactis strain UC11]
ATGATTAACAATGTTGTATTAGTAGGACGCATTACTCGCGATCCTGAACTTCGATACACCCCTCAAAATCAAGCTGTCGC
AACATTTTCATTGGCTGTAAACCGTCAATTTAAAAATGCGAATGGCGAACGTGAGGCTGATTTCATTAACTGCGTTATTT
GGCGCCAACAAGCTGAGAATTTGGCGAATTGGGCTAAAAAAGGAGCTTTGATTGGGGTAACTGGTCGAATTCAAACACGT
AACTATGAAAATCAACAAGGTCAACGCGTTTATGTGACTGAGGTTGTGGCTGACAGTTTCCAAATGTTGGAAAGTAGATC
TGCTCGTGAAGGTATGGGAGGCGGAACTTCTGCTGGTTCATATTCTGCACCTAGCCAATCTACAAATAATACTCCACGTC
CACAAACGAATAACAATAATGCAACACCGAATTTCGGTCGTGATGCTGATCCGTTTGGTAGCTCACCGATGGAAATTTCG
GATGATGACCTTCCATTCTAA
ATGATTAACAATGTTGTATTAGTAGGACGCATTACTCGCGATCCTGAACTTCGATACACCCCTCAAAATCAAGCTGTCGC
AACATTTTCATTGGCTGTAAACCGTCAATTTAAAAATGCGAATGGCGAACGTGAGGCTGATTTCATTAACTGCGTTATTT
GGCGCCAACAAGCTGAGAATTTGGCGAATTGGGCTAAAAAAGGAGCTTTGATTGGGGTAACTGGTCGAATTCAAACACGT
AACTATGAAAATCAACAAGGTCAACGCGTTTATGTGACTGAGGTTGTGGCTGACAGTTTCCAAATGTTGGAAAGTAGATC
TGCTCGTGAAGGTATGGGAGGCGGAACTTCTGCTGGTTCATATTCTGCACCTAGCCAATCTACAAATAATACTCCACGTC
CACAAACGAATAACAATAATGCAACACCGAATTTCGGTCGTGATGCTGATCCGTTTGGTAGCTCACCGATGGAAATTTCG
GATGATGACCTTCCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
60.465 |
100 |
0.627 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
57.803 |
100 |
0.602 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.855 |
0.373 |
| ssb | Glaesserella parasuis strain SC1401 |
35.028 |
100 |
0.373 |