Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   BV131_RS01845 Genome accession   NZ_CP020010
Coordinates   380264..381271 (-) Length   335 a.a.
NCBI ID   WP_005686749.1    Uniprot ID   -
Organism   Haemophilus influenzae strain 67P38H1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 375264..386271
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BV131_RS01815 (BV131_374) ruvX 375404..375823 (+) 420 WP_005648994.1 Holliday junction resolvase RuvX -
  BV131_RS01820 (BV131_375) rdgC 375873..376781 (-) 909 WP_042601824.1 recombination-associated protein RdgC -
  BV131_RS01825 (BV131_376) proC 376847..377662 (+) 816 WP_042601823.1 pyrroline-5-carboxylate reductase -
  BV131_RS01830 (BV131_377) - 377662..378828 (+) 1167 WP_042601821.1 3-phenylpropionate MFS transporter -
  BV131_RS01835 (BV131_378) xerD 378859..379752 (+) 894 WP_042601819.1 site-specific tyrosine recombinase XerD -
  BV131_RS01840 (BV131_379) - 379925..380212 (+) 288 WP_005659998.1 DUF5339 domain-containing protein -
  BV131_RS01845 (BV131_380) ruvB 380264..381271 (-) 1008 WP_005686749.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  BV131_RS01850 (BV131_381) ruvA 381279..381893 (-) 615 WP_005686751.1 Holliday junction branch migration protein RuvA Machinery gene
  BV131_RS01855 (BV131_382) ruvC 381956..382528 (-) 573 WP_011961738.1 crossover junction endodeoxyribonuclease RuvC -
  BV131_RS01860 (BV131_383) - 382575..383315 (-) 741 WP_005649034.1 YebC/PmpR family DNA-binding transcriptional regulator -
  BV131_RS01865 (BV131_384) nudB 383475..383951 (-) 477 WP_005686755.1 dihydroneopterin triphosphate diphosphatase -
  BV131_RS01870 (BV131_385) aspS 383973..385739 (-) 1767 WP_014550472.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 37005.33 Da        Isoelectric Point: 4.7834

>NTDB_id=183196 BV131_RS01845 WP_005686749.1 380264..381271(-) (ruvB) [Haemophilus influenzae strain 67P38H1]
MIEADRIISGQAKVDEDVIDRAIRPKLLADYVGQPQVREQMDIFIKAAKLRQDALDHLLIFGPPGLGKTTLANIVANEMG
VNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPAIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGA
TTRAGSLTSPLRDRFGIVQRLEFYSVEDLTSIVARSAGCLNLELEQQAAFEVARRSRGTPRIANRLLRRVRDYADVRNGG
VISVEVAKQALSMLDVDDAGFDYLDRKLLSAVIERFDGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQGFLQRTPRGRIA
TSQTYRHFGLQKLSD

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=183196 BV131_RS01845 WP_005686749.1 380264..381271(-) (ruvB) [Haemophilus influenzae strain 67P38H1]
ATGATTGAAGCAGATAGAATTATTAGCGGGCAAGCTAAGGTTGATGAAGATGTTATTGACCGTGCTATTCGTCCTAAACT
ATTAGCGGATTATGTTGGGCAGCCGCAAGTACGCGAGCAGATGGATATCTTCATCAAGGCAGCCAAACTACGTCAAGATG
CCTTAGATCATTTATTGATTTTTGGCCCTCCTGGTTTGGGAAAAACAACGCTTGCTAATATTGTGGCAAATGAAATGGGC
GTGAATATTCGTACGACGTCAGGGCCTGTGTTAGAAAAAGCGGGCGATTTGGCTGCAATGCTAACCAATCTTGAACCGCA
TGATGTGTTATTTATTGATGAAATCCATCGACTTTCCCCTGCTATTGAAGAAGTCCTTTATCCAGCAATGGAAGACTATC
AGTTGGATATTATGATTGGCGAAGGACCCGCTGCTCGTTCCATTAAATTAGATTTGCCCCCTTTTACTTTGGTTGGCGCG
ACCACTAGAGCGGGTTCTTTGACTTCTCCATTGCGTGATCGTTTTGGTATTGTGCAACGTTTGGAGTTTTATTCTGTAGA
AGATTTAACATCTATCGTTGCAAGAAGTGCGGGCTGTTTAAATCTTGAATTAGAACAACAAGCCGCTTTCGAGGTGGCTC
GTCGTTCACGAGGCACGCCTCGAATTGCAAACCGTTTATTACGACGTGTGCGTGATTATGCAGATGTGCGTAATGGGGGA
GTAATTTCTGTAGAGGTGGCAAAACAAGCACTTTCAATGCTAGATGTAGACGATGCTGGATTTGATTATTTAGATAGAAA
GTTGTTGTCTGCAGTTATTGAGCGTTTTGATGGTGGCCCTGTAGGGCTAGATAATCTTGCTGCTGCAATTGGCGAAGAAC
GTGATACCATTGAAGATGTGTTAGAGCCTTATTTGATTCAACAGGGTTTTTTACAAAGAACGCCGAGAGGTCGTATTGCA
ACATCACAAACTTATCGTCATTTTGGTTTGCAGAAATTATCAGACTAG

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(23-181)

RuvB AAA lid domain (AAA_lid_4)

(184-257)

RuvB C-terminal winged helix domain (WHD_RuvB)

(259-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

62.08

97.612

0.606
  ruvB Streptococcus pneumoniae TIGR4

57.975

97.313

0.564
  ruvB Streptococcus pneumoniae R6

57.975

97.313

0.564
  ruvB Streptococcus pneumoniae D39

57.975

97.313

0.564
  ruvB Synechocystis sp. PCC 6803

55.34

92.239

0.51
  ruvB Helicobacter pylori 26695

54.313

93.433

0.507

Multiple sequence alignment